RNA id: TU115867


Basic Information

Item Value
RNA id TU115867
length 294
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G101839
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1715664 ~ 1715957 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAGAAGGCCACAGAACAGCTTTGTTGACCGGTAAGATGGAAAGTAATTCTCTACCCATTAGGATCTGGGATGGACAGTATTTGAGACCAGTGACAGGAGTGTTGCAGAGAGTCAATAAAGCTAGGTGAGGGTCAGTGCCAGACTCAGCAGCAGCTTTTCATGCATGGTGACATTGATACAATGTTGAGTCAAACCATCATTTTGGTTGAGATTGAAATTTCAATGTTTAAAGTGTGTTGGATCAGCATTGAAATTTTTATAAAAGTTGACAGCACACATGGAGACAGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115863 lncRNA upstream 3036 1712337 ~ 1712628 (+) True G101835
TU115858 lncRNA upstream 11670 1703499 ~ 1703994 (+) True G101830
TU115144 lncRNA upstream 48761 1662560 ~ 1666903 (+) True G101199
TU115143 lncRNA upstream 52109 1662560 ~ 1663555 (+) False G101199
TU114917 lncRNA upstream 90443 1624569 ~ 1625221 (+) True G101007
TU115840 lncRNA downstream 105939 1821896 ~ 1842938 (+) True G101812
TU115849 lncRNA downstream 128497 1844454 ~ 1956653 (+) True G101821
TU115838 lncRNA downstream 235292 1951249 ~ 1954527 (+) True G101810
TU115912 lncRNA downstream 261718 1977675 ~ 1977943 (+) True G101883
TU115916 lncRNA downstream 265273 1981230 ~ 1981498 (+) True G101887
CI01000017_01654491_01655975.mRNA mRNA upstream 59482 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
CI01000017_01605157_01612590.mRNA mRNA upstream 102656 1605157 ~ 1613008 (+) True CI01000017_01605157_01612590
CI01000017_01534818_01538322.mRNA mRNA upstream 177071 1534276 ~ 1538593 (+) True CI01000017_01534818_01538322
CI01000017_01104045_01131388.mRNA mRNA upstream 584199 1104045 ~ 1131465 (+) True CI01000017_01104045_01131388
CI01000017_01067189_01070509.mRNA mRNA upstream 645070 1067052 ~ 1070594 (+) True CI01000017_01067189_01070509
CI01000017_01737674_01834279.mRNA mRNA downstream 20608 1736565 ~ 1834374 (+) True CI01000017_01737674_01834279
CI01000017_01910759_01910947.mRNA mRNA downstream 194802 1910759 ~ 1911056 (+) True CI01000017_01910759_01910947
CI01000017_02052993_02060890.mRNA mRNA downstream 337036 2052993 ~ 2061564 (+) True CI01000017_02052993_02060890
CI01000017_02061927_02067003.mRNA mRNA downstream 345909 2061866 ~ 2067178 (+) True CI01000017_02061927_02067003
TU114863 other upstream 746345 927083 ~ 969319 (+) True G100957

Expression Profile