RNA id: TU115840



Basic Information


Item Value
RNA id TU115840
length 3132
lncRNA type sense_over
GC content 0.40
exon number 4
gene id G101812
representative True

Chromosome Information


Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1821896 ~ 1842938 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCTACACACTCCATCAATTAGGGTTAAAAGAACTGTTGCCAAACATATAATGTGCTAGAAACATAATAATTACTGCAATAATGATTCAGTCATAGACTCTTAAATATTTGCTTATTTAAATCCAAAAAGTGACTTTCTTTTTGGCCGGGCAGTGTATATTTTCTCCAACAACTCAAGCATATAGAATGGCGCATAAAACAAATTCTTAAGTACAAAAGGGAGTGAATTCCAGTAGTAGGCACTCGTGCAACGTAAGCAATGCTGCACATCTGAGTCCACGAGACGAAGGGAAGTTAGCGAGTGAGGGCATAATAATTTGGAGTGGAACACAGCCAAGAATGGGCCATTGAATCTTTGACTCAACTGATTCGTTCAAAATGCTGAATCATTGGTAATGAAACACTACTGAGTGTTGCTGTGAGATATGCTATGGTTCTGATGTGCTCTTTGTTTGGAACTATATTTTTGCTGCTGAAATAGAAGAAAAACAGTCAATGTTGCTCCTAAAACATAAGTGACTTAATTTTAACTACTTGTTTATTGATATGATATCAGTCAGTCATATTTTCAATCGTGATTTCAATAACACAGAAAACACCTCTCTTCTGTGATGTTGATTAACTGCATCATTTTATAAATGATGTGCCGGGGCTTAGCCCCGGATAGCCCGGGCCCAATTTAAACCCTGCTGATAATACACCCATATTAAACTCAAATTCACTGGTTCATGGTACTTTATTTCATGCTTTAACAGTAGAATTTTCAACTTCCATTTTTTAACTAAGCATTAATGATACATTATTATATCACTTGTTAAATGCTTATTTAACAATTACATTCAGTCCTGCATTAACAGTGTGATTCAGTTTGTTTGCGCCTCCCAAAAAATGTTTAGCACCAGCTGCACCTGACCAAGAGGGCTGCGTGTAGAAAAAGAGTTTTGTAAAAGATGTTCCCATTCAGTCGGTCAAGTTAAAGCTTCTTTTAATAATCAAAGTAAAGAACCGTAATCTACATGAGAGAAACACAACCTGAGCGTGCAAAGCACAAACAATAATGGACAAATATTGAGAACTGAGAAGGAACTTAGACATGGTGATGAACTCATTACAGACAGGTGTGAGCATCACTGAATGTCCATGTTCACAAATGACTGGTGGGAAACTAGAACAAAGAAAACATTTGACTAAAGACAAACAAACTAAGTCAATTAAAATTAAACTAACTGAACATAAATGTGACAACGCCTCCTTCCAGCAAGGCGAGGCCTCACGCCATAAAATGGCTGAGGAGGTGGTTCCGAAGGTGGATGAGGGACTGGCGAAGGAGGAAGCTCCAGTGGAAGAAACCAGGGTGGCGCTGATGGTGGTAGGAGCCAGGGAGGCGAGGATGTGAGGAGTGACCAGGTGTTGACCCAGAGCCAGGATAAATGCCCATGGTGGATTCGATGTTTGGAGGAGCCAAGGTGATGATGGCCTCAACACCAACACGGGGACGGAGCCGATGGAGATGGAGCTCTAGGCGAAGACAGAGAGTTGCTGGGATTAGACTACACCTCAAAGAAGAGTGACAGCATCCAAAGCATAAACAATACTTGACAAATACTGAGAACTCAGTAGGAACTTAAATAGACATAATGATGAACTCATTACAGACAAGTGTGAGCATTATTGAATGTCCAGGGTGACAAATGACTGGCGGAAAACCAGAACAACGGAAACGTGACTGAAGACAAACAAACTAAAAGTCCATGAAGATGGAAATAACTAAACATAAACATGACAAGTCAGATTATGTTTACAATAAAAATACCATAACATACTGTAACTTTTTTTAATAAATGTAAAGATGTGGTTACTTTCGGCTCGAGCACCGATGGTGTGAAGACCCTATTGGAATTGCTCTGTTTATTATTAGGGCCTGAGTACCGATGGTGTGATTGACCCTTTTGTAATTGCTCAGTCAATTCTTCTTCTTCTTCTCCGAAATGAATCACATTTTTGAGGGCCTAAACATTCTCGAAAACTCATGAAACTTTGCACACGCGTCAGAAGTGGTAAAAATTTATGTCTGTCATGGGTCTCAGAATTAGGTGTAGCAAAATGGCTCAATAGTGCCACCTACAAAATTTTAATTAAACGCCCTTCACGCTACATTTCACGGACAAGTATGAAATTCGGGACACACATTTAATAGCCCAATACCATCTGAAAACCCCCCAAAAAAAGTGAGATATTTTGAATTTTTTCTGCAAAATTTTTGCAGTTTTTGCCATTTTCAGACGTTGTACTTTAATGAACTCCTCCTAGAGATTTTATCAGATAAACATCATATTTGGTAAGTCTAATCTAAAGGCCTTTGCGACGTTAGATTGCGAAGATCTTGCCACCTGTTGGCAACAGGAAATGTCATGTTTTACACTGTGATTAACACCTCAGATTTAACCAGAACAACGTCATATTTGGTCAGTCTAATTAAGATTAAGGCCTTAACGATGTTAAATTGCGAAGATCTTGAGTTTCGTTGAACAGCGTGTCCGTGGCGGACTGACAAAGTCTGATGTTTCGCCATGAAAGAGGAAGCTGTTGTAAGTCAGGCATACAATGTCCGATCTGCCCCAAACTTCAAATGTGTGATAAGGTCCTGGCCTAAAGACATCTATATGCCAATATTCAGTTAGTCATAGCACCACCTGCTGGCAACAGTAAATGACATGCTTTACACTGTAATTCACTTCCAGAAACACTTTCAATATGCCACGAAGTACCAAACATACTAGAAACACGTTAAATCATTCAACACTTGGCTAAGTGCTAATGTTTGCATTTACCTCCACAAAACAAGAAGTTGTTGTAACTCAGGCATACAGACATCTACATGGCAGTATTCAGTTACAGTCAAAGTGCCACGTGTTGGCAGCAGGAAGTGTGGCACTTTGAAATGACTTTGCCATAATTCTCCTGTATTTACTCGCCGGGCTCACCGCCACCCGTTGGCCTTAAGAAAACAGTGAACAATGGTTTACAGCGAAAACTCAAGATCTTTGCAATTTAACGTCACAAAGGTCTTTAGATTAGACTGATCAAATATGATGTTGATCTGATTAAAGCTCTAGGACAGTGGTTCTCAACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU115867 lncRNA upstream 105939 1715664 ~ 1715957 (+) True G101839
TU115863 lncRNA upstream 109268 1712337 ~ 1712628 (+) True G101835
TU115858 lncRNA upstream 117902 1703499 ~ 1703994 (+) True G101830
TU115144 lncRNA upstream 154993 1662560 ~ 1666903 (+) True G101199
TU115143 lncRNA upstream 158341 1662560 ~ 1663555 (+) False G101199
TU115849 lncRNA downstream 1516 1844454 ~ 1956653 (+) True G101821
TU115838 lncRNA downstream 108311 1951249 ~ 1954527 (+) True G101810
TU115912 lncRNA downstream 134737 1977675 ~ 1977943 (+) True G101883
TU115916 lncRNA downstream 138292 1981230 ~ 1981498 (+) True G101887
TU115920 lncRNA downstream 140531 1983469 ~ 1983707 (+) True G101891
CI01000017_01654491_01655975.mRNA mRNA upstream 165714 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
CI01000017_01605157_01612590.mRNA mRNA upstream 208888 1605157 ~ 1613008 (+) True CI01000017_01605157_01612590
CI01000017_01534818_01538322.mRNA mRNA upstream 283303 1534276 ~ 1538593 (+) True CI01000017_01534818_01538322
CI01000017_01104045_01131388.mRNA mRNA upstream 690431 1104045 ~ 1131465 (+) True CI01000017_01104045_01131388
CI01000017_01067189_01070509.mRNA mRNA upstream 751302 1067052 ~ 1070594 (+) True CI01000017_01067189_01070509
CI01000017_01910759_01910947.mRNA mRNA downstream 67821 1910759 ~ 1911056 (+) True CI01000017_01910759_01910947
CI01000017_02052993_02060890.mRNA mRNA downstream 210055 2052993 ~ 2061564 (+) True CI01000017_02052993_02060890
CI01000017_02061927_02067003.mRNA mRNA downstream 218928 2061866 ~ 2067178 (+) True CI01000017_02061927_02067003
TU114863 other upstream 852577 927083 ~ 969319 (+) True G100957

Expression Profile