RNA id: TU115849


Basic Information

Item Value
RNA id TU115849
length 562
lncRNA type read_through
GC content 0.35
exon number 2
gene id G101821
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1844454 ~ 1956653 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTCAGCTCTCTTGGTCGTCAGGTCGTGTGATGTATGTTGCTGAACTGTATTCAAATGTTATAAATATAAAAACACCACATTTTGAAATTTAACTGCAGTATGTCAATTTAGTTTATTTGTGTGTGCTGCGCTCATAGACTTTAGAAAACGGCGCTCATTTGTTTGATTTCTCCTCGAGAAGCTGCGCAAGCCTCAAAAGTTTAAGGTCCTTGCACCCTGACTGAGTCCGAAACTGTCATATTCGTTTTTTCATATTCGTCATTTGGTGGCTCTCAATTGTCAAAAACACCCATCAAAATATTTGCTACGGATGCGAAAAATGCAGAAAATCGAACCATCCGAATTAATTTTTATGACGGACGGAAGTTTCAGAGGCTGCAAACGTATAAAACGTGAGGTCGTATTTAGTTATATATATATATATATATATATATATATATATGAACGAATAAACTAGTCAGAATATAGGCTACAGTTAAAGCTTTCCTTTACCTGCAAGCTTCTGTAAAAAATGCAGATGATGCCTACTATTAGGCCTAGTAATAACAATAATAAAGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115840 lncRNA upstream 1516 1821896 ~ 1842938 (+) True G101812
TU115867 lncRNA upstream 128497 1715664 ~ 1715957 (+) True G101839
TU115863 lncRNA upstream 131826 1712337 ~ 1712628 (+) True G101835
TU115858 lncRNA upstream 140460 1703499 ~ 1703994 (+) True G101830
TU115144 lncRNA upstream 177551 1662560 ~ 1666903 (+) True G101199
TU115912 lncRNA downstream 21022 1977675 ~ 1977943 (+) True G101883
TU115916 lncRNA downstream 24577 1981230 ~ 1981498 (+) True G101887
TU115920 lncRNA downstream 26816 1983469 ~ 1983707 (+) True G101891
TU116085 lncRNA downstream 121613 2078266 ~ 2084974 (+) True G102039
TU116093 lncRNA downstream 142849 2099502 ~ 2101068 (+) False G102044
CI01000017_01737674_01834279.mRNA mRNA upstream 10080 1736565 ~ 1834374 (+) True CI01000017_01737674_01834279
CI01000017_01654491_01655975.mRNA mRNA upstream 188272 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
CI01000017_01605157_01612590.mRNA mRNA upstream 231446 1605157 ~ 1613008 (+) True CI01000017_01605157_01612590
CI01000017_01534818_01538322.mRNA mRNA upstream 305861 1534276 ~ 1538593 (+) True CI01000017_01534818_01538322
CI01000017_01104045_01131388.mRNA mRNA upstream 712989 1104045 ~ 1131465 (+) True CI01000017_01104045_01131388
CI01000017_02052993_02060890.mRNA mRNA downstream 96340 2052993 ~ 2061564 (+) True CI01000017_02052993_02060890
CI01000017_02061927_02067003.mRNA mRNA downstream 105213 2061866 ~ 2067178 (+) True CI01000017_02061927_02067003
TU114863 other upstream 875135 927083 ~ 969319 (+) True G100957

Expression Profile