RNA id: TU115912


Basic Information

Item Value
RNA id TU115912
length 269
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G101883
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 1977675 ~ 1977943 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGGTGTTAAGCCTCTTTAGGGCTTCAATATATCTTTTGATTTTATTATCAAGTTATTAATCAACATTTATCTTTCTAAATATTAAATTATTTGAATGACTTCTTCAACTTATGTTAAAGCATTTATTTCCCTTTTCATTTTCAAACACTAGAGAATAATGATGAATATTGTCTGTACCCCTTACTGAGAGAAAAGTACAAATTATCAGTATGTTTTGAGAAATTTTCCTGTTTGTAATTAAAGCCTGGGCCAACTTCAACCTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115849 lncRNA upstream 21022 1844454 ~ 1956653 (+) True G101821
TU115838 lncRNA upstream 23148 1951249 ~ 1954527 (+) True G101810
TU115840 lncRNA upstream 134737 1821896 ~ 1842938 (+) True G101812
TU115867 lncRNA upstream 261718 1715664 ~ 1715957 (+) True G101839
TU115863 lncRNA upstream 265047 1712337 ~ 1712628 (+) True G101835
TU115916 lncRNA downstream 3287 1981230 ~ 1981498 (+) True G101887
TU115920 lncRNA downstream 5526 1983469 ~ 1983707 (+) True G101891
TU116085 lncRNA downstream 100323 2078266 ~ 2084974 (+) True G102039
TU116093 lncRNA downstream 121559 2099502 ~ 2101068 (+) False G102044
TU116092 lncRNA downstream 122344 2100287 ~ 2101068 (+) True G102044
CI01000017_01910759_01910947.mRNA mRNA upstream 66619 1910759 ~ 1911056 (+) True CI01000017_01910759_01910947
CI01000017_01737674_01834279.mRNA mRNA upstream 143301 1736565 ~ 1834374 (+) True CI01000017_01737674_01834279
CI01000017_01654491_01655975.mRNA mRNA upstream 321493 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
CI01000017_01605157_01612590.mRNA mRNA upstream 364667 1605157 ~ 1613008 (+) True CI01000017_01605157_01612590
CI01000017_01534818_01538322.mRNA mRNA upstream 439082 1534276 ~ 1538593 (+) True CI01000017_01534818_01538322
CI01000017_02052993_02060890.mRNA mRNA downstream 75050 2052993 ~ 2061564 (+) True CI01000017_02052993_02060890
CI01000017_02061927_02067003.mRNA mRNA downstream 83923 2061866 ~ 2067178 (+) True CI01000017_02061927_02067003
TU114863 other upstream 1008356 927083 ~ 969319 (+) True G100957

Expression Profile