RNA id: TU116085


Basic Information

Item Value
RNA id TU116085
length 332
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G102039
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 2078266 ~ 2084974 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTGATCGGATTAATCACCTAGGAGGAGTATATCAAATTCCAGAGCATGCGTTTTTCAAACAACCCATAATAACTGACTTCCTGTTGAGCTGGCGTATAACTTAGAGCACGAAAGTTGTTAGGCCCGATGAGGTCTTTATGTGTTCTGAGTTTCATACTAATACATGCAAGCGTGTTTGATATATGGCCAAGTTTTCGGATCCCATTCAAGGGGGCGCTGTCGAGCCCCTGTGCCACGCCCGGGTCCCAGCCTCTGCGGCGTCCTAATGGCCGCAGATTCCAATGTGTGTGCCAATTTTCAAGAGTTTTTGAGCACGTTAAGGCCCCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115920 lncRNA upstream 94559 1983469 ~ 1983707 (+) True G101891
TU115916 lncRNA upstream 96768 1981230 ~ 1981498 (+) True G101887
TU115912 lncRNA upstream 100323 1977675 ~ 1977943 (+) True G101883
TU115849 lncRNA upstream 121613 1844454 ~ 1956653 (+) True G101821
TU115838 lncRNA upstream 123739 1951249 ~ 1954527 (+) True G101810
TU116093 lncRNA downstream 14528 2099502 ~ 2101068 (+) False G102044
TU116092 lncRNA downstream 15313 2100287 ~ 2101068 (+) True G102044
TU116096 lncRNA downstream 18428 2103402 ~ 2103811 (+) True G102046
TU116161 lncRNA downstream 42515 2127489 ~ 2129122 (+) True G102093
TU116162 lncRNA downstream 43738 2128712 ~ 2130482 (+) True G102094
CI01000017_02061927_02067003.mRNA mRNA upstream 11088 2061866 ~ 2067178 (+) True CI01000017_02061927_02067003
CI01000017_02052993_02060890.mRNA mRNA upstream 16702 2052993 ~ 2061564 (+) True CI01000017_02052993_02060890
CI01000017_01910759_01910947.mRNA mRNA upstream 167210 1910759 ~ 1911056 (+) True CI01000017_01910759_01910947
CI01000017_01737674_01834279.mRNA mRNA upstream 243892 1736565 ~ 1834374 (+) True CI01000017_01737674_01834279
CI01000017_01654491_01655975.mRNA mRNA upstream 422084 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
TU114863 other upstream 1108947 927083 ~ 969319 (+) True G100957

Expression Profile