RNA id: TU116092


Basic Information

Item Value
RNA id TU116092
length 696
lncRNA type intronic
GC content 0.35
exon number 2
gene id G102044
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 2099502 ~ 2101068 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGACAAAACCAAACCACTCCAATCCGGCTTTGTTGGTACCATGATGCTGATCATCAACTTTCTCTGTCAACTCAGGCTTTGATCCTGAGTTTGTGGAGCACGTGCACATGAATGCGTGACATCAGTGGCAAACAGCCAATCACATGCCTTGCAACAGAAAGAAACTGTGATTTACTTCTCGCGAGAGAGTCAACGTGATTCAAAACTCTTTTGCTGAAGAAAATGAAGAATTTAAACGCATTTACACTAAAGAAGAAACTTGTCCATGAAAAAGGACAAATAAAAGAAATTATCTTGCTCTATCAGAGCAAGTGAAAATTGTCAAGTGTTTGTATAGTTTATTATATACAGCAATAGAGACTCAAACATGTAAGGTTATGTAGTCATTTTTAAAGAGTTATCTGTTGATTCTACATTCTGTATATATTAATATTTATTTAAAATAAATGCTTAATAATAACTGTTAAACTAAAATTGCTTGTGTGAAATGGATTAATAATATAGATCATATAATAATTATTTATCTTTAATTTGGAGGAAGAGAAACTGGGGGAGGGACTTTATTGCGTTGGATGTGTCAGTGTCACTTTGCTCACATCTGATTGGTCCAATTTCGGTTTGAGATCTCTTACCCAGAACATAACCTGCCCCGGAGCAGGTTAGCTGTGGAGCGTAAGTTACTATGGTGATAAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116085 lncRNA upstream 15313 2078266 ~ 2084974 (+) True G102039
TU115920 lncRNA upstream 116580 1983469 ~ 1983707 (+) True G101891
TU115916 lncRNA upstream 118789 1981230 ~ 1981498 (+) True G101887
TU115912 lncRNA upstream 122344 1977675 ~ 1977943 (+) True G101883
TU115838 lncRNA upstream 145760 1951249 ~ 1954527 (+) True G101810
TU116096 lncRNA downstream 2334 2103402 ~ 2103811 (+) True G102046
TU116161 lncRNA downstream 26421 2127489 ~ 2129122 (+) True G102093
TU116162 lncRNA downstream 27644 2128712 ~ 2130482 (+) True G102094
CI01000017_02061927_02067003.mRNA mRNA upstream 33109 2061866 ~ 2067178 (+) True CI01000017_02061927_02067003
CI01000017_02052993_02060890.mRNA mRNA upstream 38723 2052993 ~ 2061564 (+) True CI01000017_02052993_02060890
CI01000017_01910759_01910947.mRNA mRNA upstream 189231 1910759 ~ 1911056 (+) True CI01000017_01910759_01910947
CI01000017_01737674_01834279.mRNA mRNA upstream 265913 1736565 ~ 1834374 (+) True CI01000017_01737674_01834279
CI01000017_01654491_01655975.mRNA mRNA upstream 444105 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
TU114863 other upstream 1130968 927083 ~ 969319 (+) True G100957

Expression Profile