RNA id: TU116096


Basic Information

Item Value
RNA id TU116096
length 368
lncRNA type intronic
GC content 0.39
exon number 2
gene id G102046
representative True

Chromosome Information

Item Value
chromosome id CI01000017
NCBI id null
chromosome length 2146858
location 2103402 ~ 2103811 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGAGTGGTTTCACAACAACTCTGTGACTGTTCTTGAATGGCCCAGCCAGAGCCCTGATGTCCACCAACGTTTACCATCCAACCTGACAGAACTGGAGAGGATCTGCAAGGAGAAATGGCAGAGGATCCCCAAATCCAGGTGTGAAAAACTTGTTGCATCTTTCCCAAAAAGACTCATGGCTGTATTAGATCAAAAGGGTGCTTCTACTAAATACTGAGCAAAGGGTCTGAATACTTAGGACCATGTGATATTTCAGTTTTTCTTTTTTAATAAATCTGCAAAAATGTCAACAATTCTGTGTTTTTCTGTCAATATGGGGTGCTGTGTGTACATTAATGAGGAAAAAAATTAACTTAAATGATTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116093 lncRNA upstream 2334 2099502 ~ 2101068 (+) False G102044
TU116092 lncRNA upstream 2334 2100287 ~ 2101068 (+) True G102044
TU116085 lncRNA upstream 18428 2078266 ~ 2084974 (+) True G102039
TU115920 lncRNA upstream 119695 1983469 ~ 1983707 (+) True G101891
TU115916 lncRNA upstream 121904 1981230 ~ 1981498 (+) True G101887
TU116161 lncRNA downstream 23678 2127489 ~ 2129122 (+) True G102093
TU116162 lncRNA downstream 24901 2128712 ~ 2130482 (+) True G102094
CI01000017_02061927_02067003.mRNA mRNA upstream 36224 2061866 ~ 2067178 (+) True CI01000017_02061927_02067003
CI01000017_02052993_02060890.mRNA mRNA upstream 41838 2052993 ~ 2061564 (+) True CI01000017_02052993_02060890
CI01000017_01910759_01910947.mRNA mRNA upstream 192346 1910759 ~ 1911056 (+) True CI01000017_01910759_01910947
CI01000017_01737674_01834279.mRNA mRNA upstream 269028 1736565 ~ 1834374 (+) True CI01000017_01737674_01834279
CI01000017_01654491_01655975.mRNA mRNA upstream 447220 1654410 ~ 1656182 (+) True CI01000017_01654491_01655975
TU114863 other upstream 1134083 927083 ~ 969319 (+) True G100957

Expression Profile