Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001209 |
| length | 914 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 6 |
| gene id | XLOC_000726 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 54889733 ~ 54907823 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0072659 | protein localization to plasma membrane | biological_process |
| GO:0045773 | positive regulation of axon extension | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0048011 | neurotrophin TRK receptor signaling pathway | biological_process |
| GO:0007409 | axonogenesis | biological_process |
| GO:0031175 | neuron projection development | biological_process |
| GO:0071787 | endoplasmic reticulum tubular network formation | biological_process |
| GO:0032584 | growth cone membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0071782 | endoplasmic reticulum tubular network | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0043621 | protein self-association | molecular_function |
| id | description |
|---|---|
| ko04144 | Endocytosis |
| id | description |
|---|---|
| ZDB-GENE-061013-502 | Predicted to enable protein self-association. Acts upstream of or within axonogenesis. Predicted to be located in endoplasmic reticulum membrane and recycling endosome membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum tubular network and growth cone membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 33. Orthologous to human ZFYVE27 (zinc finger FYVE-type containing 27). |
| ensembl_id | ENSDART00000137352 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003180 | lncRNA | upstream | 200273 | 54698173 ~ 54700755 (+) | False | XLOC_000721 |
| TCONS_00003181 | lncRNA | upstream | 200273 | 54698183 ~ 54700755 (+) | False | XLOC_000721 |
| TCONS_00003182 | lncRNA | upstream | 200273 | 54698188 ~ 54700755 (+) | True | XLOC_000721 |
| TCONS_00003179 | lncRNA | upstream | 287549 | 54611838 ~ 54613479 (+) | True | XLOC_000715 |
| TCONS_00003178 | lncRNA | upstream | 496881 | 54401933 ~ 54404147 (+) | True | XLOC_000713 |
| TCONS_00003183 | lncRNA | downstream | 52355 | 54959492 ~ 54985297 (+) | False | XLOC_000729 |
| TCONS_00003184 | lncRNA | downstream | 67058 | 54974195 ~ 54978775 (+) | True | XLOC_000729 |
| TCONS_00001217 | lncRNA | downstream | 173680 | 55080817 ~ 55084863 (+) | False | XLOC_000731 |
| TCONS_00001218 | lncRNA | downstream | 178508 | 55085645 ~ 55088052 (+) | True | XLOC_000731 |
| TCONS_00003187 | lncRNA | downstream | 277627 | 55184764 ~ 55191262 (+) | False | XLOC_000735 |
| TCONS_00001206 | mRNA | upstream | 11527 | 54865552 ~ 54889501 (+) | False | XLOC_000725 |
| TCONS_00001207 | mRNA | upstream | 12564 | 54871725 ~ 54888464 (+) | True | XLOC_000725 |
| TCONS_00001204 | mRNA | upstream | 39440 | 54834119 ~ 54861588 (+) | False | XLOC_000724 |
| TCONS_00001205 | mRNA | upstream | 46351 | 54835131 ~ 54854677 (+) | True | XLOC_000724 |
| TCONS_00001202 | mRNA | upstream | 115845 | 54766943 ~ 54785183 (+) | False | XLOC_000723 |
| TCONS_00001211 | mRNA | downstream | 1758 | 54908895 ~ 54931660 (+) | False | XLOC_000727 |
| TCONS_00001212 | mRNA | downstream | 4321 | 54911458 ~ 54931913 (+) | True | XLOC_000727 |
| TCONS_00001213 | mRNA | downstream | 40922 | 54948059 ~ 54958463 (+) | False | XLOC_000728 |
| TCONS_00001214 | mRNA | downstream | 45403 | 54952540 ~ 54957798 (+) | True | XLOC_000728 |
| TCONS_00001215 | mRNA | downstream | 95446 | 55002583 ~ 55007223 (+) | True | XLOC_000730 |
| TCONS_00001186 | other | upstream | 714872 | 54186039 ~ 54186156 (+) | True | XLOC_000710 |
| TCONS_00001180 | other | upstream | 839818 | 54053104 ~ 54061210 (+) | True | XLOC_000705 |
| TCONS_00001166 | other | upstream | 1513147 | 53387765 ~ 53387881 (+) | True | XLOC_000690 |
| TCONS_00001160 | other | upstream | 1532994 | 53364510 ~ 53368034 (+) | True | XLOC_000689 |
| TCONS_00001154 | other | upstream | 1839831 | 52999832 ~ 53061197 (+) | False | XLOC_000682 |
| TCONS_00001221 | other | downstream | 221328 | 55128465 ~ 55128579 (+) | True | XLOC_000733 |
| TCONS_00001233 | other | downstream | 386488 | 55293625 ~ 55297251 (+) | False | XLOC_000739 |
| TCONS_00001304 | other | downstream | 2440761 | 57347898 ~ 57355033 (+) | False | XLOC_000813 |
| TCONS_00001335 | other | downstream | 3253014 | 58160151 ~ 58173589 (+) | True | XLOC_000837 |
| TCONS_00001394 | other | downstream | 4224155 | 59131292 ~ 59131406 (+) | True | XLOC_000888 |
