RNA id: TU116676


Basic Information

Item Value
RNA id TU116676
length 307
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G102547
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 578676 ~ 578982 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGACAGTCAAGATACGTTAAAAACGGATGCGCGCATGAAAACTTGTCCAGAGTATTACATTATCAGCCCACACACGTGCGGTGACTGTGAGCTGCATTACACGCGGGACTGAAATGGTGGCTAACAAAGACATCTCTAGTGCTAATTTTGATCACGGCTTGTCTTGAAAAACTAAGACAATTTGACATTCGTCGTAGAAGTCACACTGCAGGACTGTGTGCCAAATCTTCTGACACTGCCAGAATTTCGTCGGAGGTAAAATTTGATCGCAACGGTCATTAATCGGCTGTCTGGGAACATGTCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116674 lncRNA downstream 3288 575049 ~ 575388 (-) True G102545
TU116657 lncRNA downstream 19358 558940 ~ 559318 (-) True G102528
TU116629 lncRNA downstream 83530 494789 ~ 495146 (-) True G102503
TU116627 lncRNA downstream 83546 494789 ~ 495130 (-) False G102503
TU116622 lncRNA downstream 102288 476074 ~ 476388 (-) True G102498
TU116725 lncRNA upstream 38750 617732 ~ 617954 (-) True G102590
TU116735 lncRNA upstream 59370 638352 ~ 640494 (-) True G102600
TU117083 lncRNA upstream 219259 798241 ~ 802937 (-) True G102915
TU117121 lncRNA upstream 226131 805113 ~ 877249 (-) True G102949
TU117127 lncRNA upstream 230938 809920 ~ 811731 (-) True G102955
CI01000018_00333019_00452055.mRNA mRNA downstream 126621 333019 ~ 452055 (-) True CI01000018_00333019_00452055
CI01000018_00318175_00326190.mRNA mRNA downstream 251864 317689 ~ 326812 (-) True CI01000018_00318175_00326190
CI01000018_00259118_00271046.mRNA mRNA downstream 307222 257887 ~ 271454 (-) True CI01000018_00259118_00271046
CI01000018_00229092_00242308.mRNA mRNA downstream 336285 228822 ~ 242391 (-) False CI01000018_00229092_00242308
CI01000018_00207988_00210462.mRNA mRNA downstream 366347 207970 ~ 212329 (-) True CI01000018_00207988_00210462
CI01000018_00777676_00783256.mRNA mRNA upstream 197530 776512 ~ 783529 (-) True CI01000018_00777676_00783256
CI01000018_00837737_00838788.mRNA mRNA upstream 258568 837550 ~ 838864 (-) True CI01000018_00837737_00838788
CI01000018_00985130_00987510.mRNA mRNA upstream 406010 984992 ~ 987689 (-) True CI01000018_00985130_00987510
CI01000018_00992108_01000450.mRNA mRNA upstream 412464 991446 ~ 1000450 (-) True CI01000018_00992108_01000450
CI01000018_01030816_01076302.mRNA mRNA upstream 450855 1029837 ~ 1076302 (-) True CI01000018_01030816_01076302
TU118112 other upstream 1380515 1959497 ~ 1960058 (-) True G103842
TU118149 other upstream 1807226 2386208 ~ 2400903 (-) True G103873
TU119324 other upstream 2903122 3482104 ~ 3500514 (-) True G104968
TU119461 other upstream 3428715 4007697 ~ 4017817 (-) False G105104
TU119464 other upstream 3428715 4007697 ~ 4010575 (-) True G105104

Expression Profile