RNA id: TCONS_00001213


Basic Information

Item Value
RNA id TCONS_00001213
length 1704
RNA type mRNA
GC content 0.45
exon number 8
gene id XLOC_000728
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54948059 ~ 54958463 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaaGCATTTTTGAATGTGACGTCACGGCGCCGGTACGTCTCCAAACATCCGGTCATGGTTTCAACGGTTTGGCGAACTGAAAAATATTAAGACATCCTGATGGAGACCGAAGCAGCTCAGCCTGAACAAGGCTCCAAAACTGCTGTCCCGGCCCGAACTAAAAGGCCCACCATGGAAGTCTACGTTCCCAAGAAACGGCAGGCCGAGAAAACAGACAAACCTCAGTCAGACGGTGACAAGAAATCCAAACCCAGACCTCGATACACAGATAAAGCCCGCAAGAACAAGAAAGATAAAGCCAAAGTGAGCGAAACCCAAAACGGAGAAATTAAACCAGATGCTGGAGaacaaggaggaggaggagatacAGAAAACCAAAACACTGAACCAGAAAAAGATGAAGAGTCCACAGGAGACATGAACACCACATCCAGAACTGTGCACTCCCCAGAAGACTCGAGCAGTGTGCTGGAACATGATGACGAGGAGATGAAGGACGAAGAGGAGAACTGGGATTCGTTATTTAATGACGACGGAGACTGTCTGGACCCCCATTTGATGGAGGAGATGTCTCTAAAGGAAGGACGCAAGAAGCAGTCTGCACAGGACTCAGGCTTCGACTACTATAATTGGTCGCCGCAGGATGACGAGGAGGTGGAGCTTCGGGATGACGAGCTGTCACACATCATCGAGATTTATGATTTCCCAACCGAATTCAAGACGGAGGATTTGGTCAGATCCTTCAGCTCCTTCCAgcagAAGGGCTTTGACATCACGTGGATCGACGATACACACGCTCTTGGTCTGTTCTCCAGTCCTATCGCTGCTCGTGATGCTTTGAGGATGAAGAACCCCATGATGAAGGTCCGACCTCTGTCCAGCTCATCAAACGCCACTAAAGCCAAAGCGCGCAGCTGCTCCGattatcTGCTGCCGGCTAAAGAGCGTCCTCAGACGAGTGCGGCTTTGGCACGGCGGCTGGTCATCGGAGCTCTGGGCGTGAAGAGCAACCAGACCCGGGAAGAGCGAGAGGCAGAGAGGAACAAACTACAGCAAGCCAGAGAGCAAAAGCGTTTAGCCGCTAAGCAGCGTGAAGATGCCTGGGAGGGCAAGTGAAGatacagTTGTAGGAGCTTCACAGGTTCAAGAGACGCCTCGGTGGATCAGGACTACTGCCAAACCAGCATGGACTGAACCAAAGCCACAGGGACAGGGGCTCATCCAAACAGGGAGATTTTGTAATTTTTCTATCCTCTTGAAAGAACTTTTCCCCGTAAATGTTTGATTGTTATAGGGTTTGGTTTGGACCtgcaattttaatgtttttttttaaatgcaattttttttagagagagaatGTTTTATTGAGTAAATTAAACTAGACCATGGCAatataaatcagttttattttgtttttggatctttttttttttatttggacttTGTATATGCGTGAATCAGAAAAAAATCTGTCACATTTCATAGTAATGAagcaaaaataacatttatggGGAAAATTATTAAGAGCTCTGAACTGGTCAAGCATTACAGTAATGTTTTAACCCACAGTACCATACATTGTGGATTTTTCAGCTAAAACCTGCATTAAAGATCATTGTGCATATTATTTTTGTCAACCAAGGCTTTGTAAACCATCGGCACATTCTAATACCAAACTTCCTGTATATGTTATTTAGATGTAAA

Function

GO:

id name namespace
GO:0035145 exon-exon junction complex cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4156 Predicted to enable nucleic acid binding activity. Orthologous to human R3HCC1L (R3H domain and coiled-coil containing 1 like).

Ensembl:

ensembl_id ENSDART00000152528

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001210 lncRNA upstream 41352 54905750 ~ 54906707 (+) True XLOC_000726
TCONS_00003180 lncRNA upstream 247304 54698173 ~ 54700755 (+) False XLOC_000721
TCONS_00003181 lncRNA upstream 247304 54698183 ~ 54700755 (+) False XLOC_000721
TCONS_00003182 lncRNA upstream 247304 54698188 ~ 54700755 (+) True XLOC_000721
TCONS_00003179 lncRNA upstream 334580 54611838 ~ 54613479 (+) True XLOC_000715
TCONS_00003183 lncRNA downstream 1029 54959492 ~ 54985297 (+) False XLOC_000729
TCONS_00003184 lncRNA downstream 15732 54974195 ~ 54978775 (+) True XLOC_000729
TCONS_00001217 lncRNA downstream 122354 55080817 ~ 55084863 (+) False XLOC_000731
TCONS_00001218 lncRNA downstream 127182 55085645 ~ 55088052 (+) True XLOC_000731
TCONS_00003187 lncRNA downstream 226301 55184764 ~ 55191262 (+) False XLOC_000735
TCONS_00001212 mRNA upstream 16146 54911458 ~ 54931913 (+) True XLOC_000727
TCONS_00001211 mRNA upstream 16399 54908895 ~ 54931660 (+) False XLOC_000727
TCONS_00001208 mRNA upstream 40236 54889733 ~ 54907823 (+) False XLOC_000726
TCONS_00001209 mRNA upstream 40922 54901028 ~ 54907137 (+) False XLOC_000726
TCONS_00001206 mRNA upstream 58558 54865552 ~ 54889501 (+) False XLOC_000725
TCONS_00001215 mRNA downstream 44120 55002583 ~ 55007223 (+) True XLOC_000730
TCONS_00001216 mRNA downstream 122334 55080797 ~ 55089987 (+) False XLOC_000731
TCONS_00001219 mRNA downstream 136851 55095314 ~ 55109872 (+) False XLOC_000732
TCONS_00001220 mRNA downstream 145913 55104376 ~ 55109914 (+) True XLOC_000732
TCONS_00001222 mRNA downstream 179480 55137943 ~ 55144600 (+) False XLOC_000734
TCONS_00001186 other upstream 761903 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 886849 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 1560178 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001160 other upstream 1580025 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001154 other upstream 1886862 52999832 ~ 53061197 (+) False XLOC_000682
TCONS_00001221 other downstream 170002 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001233 other downstream 335162 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001304 other downstream 2389435 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 3201688 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 4172829 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

//