RNA id: TU119464


Basic Information

Item Value
RNA id TU119464
length 494
RNA type TUCP
GC content 0.52
exon number 3
gene id G105104
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4007697 ~ 4017817 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACCGCCATAGATAGCAAAAGCCTGATCGTAAAAGAAACGTCTTTTTAGAGTGTCTTCCATCTTGGTTCGATCTACAATGTCATCTTTGGGCTGTAAGGCAAGCTCCTTGGCCTCAAGGATTCTCTTGCGAGCTTTCAGTTCTGCAACGGCCTTATTGACATCTACATCAGGAGCGTTTTCTGCCTTCAATTTACGCACAAGATCACCCTGCTCCTTCACTGCCAGCCTCAGGGGAGCCAGAACCTCTTCAATACTGCCATCCATATTCTGCCCTTCCGTCATCTCCAGCCACGCGCTTCTCTTCTTCTTCTTACACAAACAGCCGGACAGTGAGAGCGCTCTGATCGGAGGGGAAGCACACAGACGTATGGGACTGGATCGAACCCTAGAAACAGCGTGGACGGTGACAATCTGTGTACCGGTCCTGAGGAGGAGTGCTGATGTTGCGCTACGCAGAGACAGCATGGACCGAGAGGAGGAGCAACCACACCGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119318 lncRNA downstream 195151 3811411 ~ 3812546 (-) True G104963
TU119446 lncRNA downstream 303798 3703444 ~ 3703899 (-) True G105090
TU119440 lncRNA downstream 316339 3691083 ~ 3691358 (-) True G105084
TU119435 lncRNA downstream 326186 3681192 ~ 3681511 (-) True G105079
TU119433 lncRNA downstream 327716 3679304 ~ 3679981 (-) True G105077
TU119485 lncRNA upstream 73968 4084543 ~ 4085146 (-) True G105115
TU119510 lncRNA upstream 75951 4086526 ~ 4086789 (-) True G105140
TU119512 lncRNA upstream 76569 4087144 ~ 4087354 (-) True G105142
TU119511 lncRNA upstream 78815 4089390 ~ 4092340 (-) True G105141
TU119516 lncRNA upstream 85757 4096332 ~ 4096565 (-) True G105146
CI01000018_03991163_03994220.mRNA mRNA downstream 13459 3990550 ~ 3994238 (-) True CI01000018_03991163_03994220
CI01000018_03965992_03984331.mRNA mRNA downstream 22178 3965939 ~ 3985519 (-) True CI01000018_03965992_03984331
CI01000018_03942344_03955439.mRNA mRNA downstream 52258 3942087 ~ 3955439 (-) True CI01000018_03942344_03955439
CI01000018_03888251_03907553.mRNA mRNA downstream 98522 3887539 ~ 3909175 (-) True CI01000018_03888251_03907553
CI01000018_03814990_03841716.mRNA mRNA downstream 165981 3814791 ~ 3841716 (-) True CI01000018_03814990_03841716
CI01000018_04041639_04049792.mRNA mRNA upstream 30255 4040830 ~ 4049792 (-) True CI01000018_04041639_04049792
CI01000018_04075425_04081550.mRNA mRNA upstream 64830 4075405 ~ 4081550 (-) True CI01000018_04075425_04081550
CI01000018_04118240_04160401.mRNA mRNA upstream 107412 4117987 ~ 4160401 (-) True CI01000018_04118240_04160401
CI01000018_04221457_04229417.mRNA mRNA upstream 210661 4221236 ~ 4229417 (-) True CI01000018_04221457_04229417
CI01000018_04231186_04233076.mRNA mRNA upstream 220344 4230919 ~ 4233076 (-) True CI01000018_04231186_04233076
TU119324 other downstream 507183 3482104 ~ 3500514 (-) True G104968
TU118149 other downstream 1606794 2386208 ~ 2400903 (-) True G103873
TU118112 other downstream 2047639 1959497 ~ 1960058 (-) True G103842
TU119577 other upstream 232892 4243467 ~ 4246010 (-) True G105200
TU119553 other upstream 844506 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU120472 other upstream 1880761 5891336 ~ 6023917 (-) True G105976
TU120471 other upstream 1947031 5957606 ~ 6023917 (-) True G105976
TU121114 other upstream 2519872 6530447 ~ 6533512 (-) True G106538

Expression Profile