RNA id: TU119512


Basic Information

Item Value
RNA id TU119512
length 211
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G105142
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4087144 ~ 4087354 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATTATGAAATAACTATAATCATCACTACAGCAAACCTGACGCAGCTGCTTGTTCTACATGCCCATTTGCTGCTCCATTGGTGAGCGCCACGTCCTCCATGGTGAGAACCTGAGGGGGGCTGATCCTGAGGTCTTCCTGCACCTCGGCCAGGGTCACCTCCAGAGATGGACCCCCTTTCTGGTTATAATGTTGCTGAAGTTTTTGAATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119510 lncRNA downstream 355 4086526 ~ 4086789 (-) True G105140
TU119485 lncRNA downstream 1998 4084543 ~ 4085146 (-) True G105115
TU119318 lncRNA downstream 274598 3811411 ~ 3812546 (-) True G104963
TU119446 lncRNA downstream 383245 3703444 ~ 3703899 (-) True G105090
TU119440 lncRNA downstream 395786 3691083 ~ 3691358 (-) True G105084
TU119511 lncRNA upstream 2036 4089390 ~ 4092340 (-) True G105141
TU119516 lncRNA upstream 8978 4096332 ~ 4096565 (-) True G105146
TU119518 lncRNA upstream 12567 4099921 ~ 4100157 (-) True G105148
TU119637 lncRNA upstream 119551 4206905 ~ 4207137 (-) True G105259
TU119639 lncRNA upstream 123543 4210897 ~ 4211258 (-) True G105261
CI01000018_04075425_04081550.mRNA mRNA downstream 5594 4075405 ~ 4081550 (-) True CI01000018_04075425_04081550
CI01000018_04041639_04049792.mRNA mRNA downstream 37352 4040830 ~ 4049792 (-) True CI01000018_04041639_04049792
CI01000018_03991163_03994220.mRNA mRNA downstream 92906 3990550 ~ 3994238 (-) True CI01000018_03991163_03994220
CI01000018_03965992_03984331.mRNA mRNA downstream 101625 3965939 ~ 3985519 (-) True CI01000018_03965992_03984331
CI01000018_03942344_03955439.mRNA mRNA downstream 131705 3942087 ~ 3955439 (-) True CI01000018_03942344_03955439
CI01000018_04118240_04160401.mRNA mRNA upstream 30633 4117987 ~ 4160401 (-) True CI01000018_04118240_04160401
CI01000018_04221457_04229417.mRNA mRNA upstream 133882 4221236 ~ 4229417 (-) True CI01000018_04221457_04229417
CI01000018_04231186_04233076.mRNA mRNA upstream 143565 4230919 ~ 4233076 (-) True CI01000018_04231186_04233076
CI01000018_04239141_04241413.mRNA mRNA upstream 150899 4238253 ~ 4241413 (-) True CI01000018_04239141_04241413
CI01000018_04248388_04258010.mRNA mRNA upstream 160768 4248122 ~ 4258038 (-) True CI01000018_04248388_04258010
TU119461 other downstream 69327 4007697 ~ 4017817 (-) False G105104
TU119464 other downstream 76569 4007697 ~ 4010575 (-) True G105104
TU119324 other downstream 586630 3482104 ~ 3500514 (-) True G104968
TU118149 other downstream 1686241 2386208 ~ 2400903 (-) True G103873
TU118112 other downstream 2127086 1959497 ~ 1960058 (-) True G103842
TU119577 other upstream 156113 4243467 ~ 4246010 (-) True G105200
TU119553 other upstream 767727 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU120472 other upstream 1803982 5891336 ~ 6023917 (-) True G105976
TU120471 other upstream 1870252 5957606 ~ 6023917 (-) True G105976
TU121114 other upstream 2443093 6530447 ~ 6533512 (-) True G106538

Expression Profile