RNA id: TU119556


Basic Information

Item Value
RNA id TU119556
length 785
lncRNA type read_through
GC content 0.37
exon number 3
gene id G105185
representative False

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4234605 ~ 4238135 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGAGTTAAGTGATGTTTTTATTGTAAGTGAGGGAAAATGATCTGGTATTGTACAGGTATGCCAAAAACAAAATTGGAGACGTATTTAAAAGATTACTTAATTCACAATGAGTTACATTGCAGGTATTGTTTACACATTAGTCAATAAATACATGTTCATTATTGTTAGGGTCATCACATGTAATAAATGAGTTAACATGTTTCATCTTCTGTTGTTAATGTAAACATTTACAGTGTAAAAATGGTAACAGTGGGATTTTGGCCAATATTCATGATGATTTGATCTTTCTGGAGTTTTGCTTCAGAAGTATTCAATGGCATCATGATGAGCCTTGGATGTCTGTATGCCGTGCAGCTCCAGTTTTTCTCCAGCATGGGGCAGGGTTTTATAGACACGTAGATGAATATAGTCATCCTCACCTACATGCACCTAAAACAGATCTTAATGAAGTAATTTGTCCCCGCAACAAGTTGTGTTTTAAAAGATTTGGCAGTGAAAACGTCAAACGTGCGCCCAGCTTTATTCTCGGCATGAGACTTCATCTGAGGAAAAACGGGAGTTGTCAGTGAATGTTGTTTTATGACACATCACATCATTATTTGTTTTTCTACAATGTAAAGTTACCAACCTCATCGCATATTTTCTGCACCTCTTCATTGGCATCTTTCGCCTCGGTTGTTCCGCCACAAAGTAAAGGCATTTTAAATACAAACGGTTAATAGAAATTACTCGGGAACGTCTGTTCACAACAAGATTCACTGACTTGAAAGTTTACTTCCTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119641 lncRNA downstream 15696 4218678 ~ 4218909 (-) True G105263
TU119639 lncRNA downstream 23347 4210897 ~ 4211258 (-) True G105261
TU119637 lncRNA downstream 27468 4206905 ~ 4207137 (-) True G105259
TU119518 lncRNA downstream 134448 4099921 ~ 4100157 (-) True G105148
TU119516 lncRNA downstream 138040 4096332 ~ 4096565 (-) True G105146
TU119664 lncRNA upstream 47604 4285739 ~ 4285992 (-) True G105277
TU119691 lncRNA upstream 194056 4432191 ~ 4432482 (-) True G105304
TU119693 lncRNA upstream 206667 4444802 ~ 4445367 (-) True G105306
TU119696 lncRNA upstream 216126 4454261 ~ 4454478 (-) True G105307
TU119591 lncRNA upstream 346493 4584628 ~ 4587775 (-) True G105213
CI01000018_04231186_04233076.mRNA mRNA downstream 1529 4230919 ~ 4233076 (-) True CI01000018_04231186_04233076
CI01000018_04221457_04229417.mRNA mRNA downstream 5188 4221236 ~ 4229417 (-) True CI01000018_04221457_04229417
CI01000018_04118240_04160401.mRNA mRNA downstream 74204 4117987 ~ 4160401 (-) True CI01000018_04118240_04160401
CI01000018_04075425_04081550.mRNA mRNA downstream 153055 4075405 ~ 4081550 (-) True CI01000018_04075425_04081550
CI01000018_04041639_04049792.mRNA mRNA downstream 184813 4040830 ~ 4049792 (-) True CI01000018_04041639_04049792
CI01000018_04239141_04241413.mRNA mRNA upstream 118 4238253 ~ 4241413 (-) True CI01000018_04239141_04241413
CI01000018_04248388_04258010.mRNA mRNA upstream 9987 4248122 ~ 4258038 (-) True CI01000018_04248388_04258010
CI01000018_04307560_04321214.mRNA mRNA upstream 68786 4306921 ~ 4322286 (-) True CI01000018_04307560_04321214
CI01000018_04336914_04342114.mRNA mRNA upstream 98454 4336589 ~ 4342114 (-) True CI01000018_04336914_04342114
CI01000018_04344907_04359005.mRNA mRNA upstream 105956 4344091 ~ 4359005 (-) True CI01000018_04344907_04359005
TU119461 other downstream 216788 4007697 ~ 4017817 (-) False G105104
TU119464 other downstream 224030 4007697 ~ 4010575 (-) True G105104
TU119324 other downstream 734091 3482104 ~ 3500514 (-) True G104968
TU118149 other downstream 1833702 2386208 ~ 2400903 (-) True G103873
TU118112 other downstream 2274547 1959497 ~ 1960058 (-) True G103842
TU119577 other upstream 5332 4243467 ~ 4246010 (-) True G105200
TU119553 other upstream 616946 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU120472 other upstream 1653201 5891336 ~ 6023917 (-) True G105976
TU120471 other upstream 1719471 5957606 ~ 6023917 (-) True G105976
TU121114 other upstream 2292312 6530447 ~ 6533512 (-) True G106538

Expression Profile