RNA id: TU119591



Basic Information


Item Value
RNA id TU119591
length 1297
lncRNA type antisense_over
GC content 0.50
exon number 4
gene id G105213
representative True

Chromosome Information


Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4584628 ~ 4587775 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCGAGCAGGTCGCTTCGAGCATCGTTCGTGGGTTGGGCCTCATTAGGCACAGAGGGCCGTTTGGGAGTGAGAGATTGGGCTGCACTGGTGGGAGGGGGTGGGGCTACTGGTGGAGGAGGGGCAGCCATTGGTACAGAGGTAGGTGGAATGGGTGGGGCATAGCCAGCGACTGCTCCCATCGGTCCTAGATGGCCTGGTGGCGGGACCGGTCCCATGGGTGGCATAGCAAAAGCGGTTTGTGCTGATGGGATGACAGCAGGTGGTGGAGGCGGTGCCCCAGAATTCATGTAATCCACGCTGTAGTCGGCAGGTGGGAGGGCCATAGAGCCGTTAATTGTGTTTGATACTGGTGGAGGGGGCGGAGCCTGGTGCGGACGACCCAGTGTGCCAGAACGGTATGCCATAGGCCCACCCCGGTAATCCTGGTCCATGGTCATTTGGGTATGAGCTGACAGGGCCGCCATGCTGGGCGGAGGCCCAGAGTAAGTGTGGGCGTGGCCAGCGTGGTTGGCCATGGAGAGATAACCGTGATCTCCATGATCTCCATGAGACCTGTGCTCTGGGGACATGATGCCCTCCGTGGAGCCTCCTCTGTGCACAGTGTGGGAATGTCGATGGTCAGGTCTCAGTTCCTTATCGAAGGCCATCATGTTCCATTCCTGCCTGCGGTTTCGAGCTTTTCGCACCTTTTTCACCTCCCTCTGCAGTGTGCCGTCCACACAGCGTCTCTGCTCCTTCTGTCTTCTTTTCTCTTTCCTCTTGTCTTCTGTGTCCTGTAACATCTTCTCCTTCCACAGGTCAAAGAAGTAGGAGGGGTCAGTGTAGAACTTCAGTCCTTCTTTATCATCATCTCTATGGCAACAAAAATGAAAAACACTTCATTTTCGTGATTGATTTTGATTATTCAAAGCTATTTTAAATAATTTCTCTCAATTAATCTCTCAATAAAGCAATGAGTGTGGTAGATTTGTCTCTGAATACATTTATGTAACCATTCCCATTCAGAATGCCAGTTGCTGGATTGCTTTTATGGACCTCTTCAGGGGAGAAAAGGATTTTAAAAGCATCTTGATGCATCTTTTCTGAGTGGCTGCTTTTCCAAAAGTGCTATTAATTGGCCATTAATCATTTATGCAAAATCTCCTAAAACTCTGTTAACCGCGTTCAGCCGAACAGACAGAAAAAGATGAGTCAGAGCGCAGCCACTGTCCCTTGAAACATTCCCTCCACACATTCAGCATTAGATCTGTTTAAGTATTAATGAGTGGCCCATATTCACTACCTTGAGAGCTAGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU119696 lncRNA downstream 130150 4454261 ~ 4454478 (-) True G105307
TU119693 lncRNA downstream 139261 4444802 ~ 4445367 (-) True G105306
TU119691 lncRNA downstream 152146 4432191 ~ 4432482 (-) True G105304
TU119664 lncRNA downstream 298636 4285739 ~ 4285992 (-) True G105277
TU119556 lncRNA downstream 346493 4234605 ~ 4238135 (-) False G105185
TU119575 lncRNA upstream 24922 4612697 ~ 4615380 (-) False G105199
TU119574 lncRNA upstream 26979 4614754 ~ 4615380 (-) True G105199
TU119717 lncRNA upstream 33576 4621351 ~ 4621628 (-) True G105328
TU119587 lncRNA upstream 62106 4649881 ~ 4651347 (-) True G105209
TU119725 lncRNA upstream 153886 4741661 ~ 4741921 (-) True G105336
CI01000018_04557779_04561445.mRNA mRNA downstream 22631 4557636 ~ 4561997 (-) True CI01000018_04557779_04561445
CI01000018_04491510_04539751.mRNA mRNA downstream 44877 4491235 ~ 4539751 (-) True CI01000018_04491510_04539751
CI01000018_04464837_04473051.mRNA mRNA downstream 111577 4464638 ~ 4473051 (-) True CI01000018_04464837_04473051
CI01000018_04397198_04411105.mRNA mRNA downstream 173523 4396649 ~ 4411105 (-) True CI01000018_04397198_04411105
CI01000018_04361150_04364887.mRNA mRNA downstream 219741 4360619 ~ 4364887 (-) True CI01000018_04361150_04364887
CI01000018_04595424_04596449.mRNA mRNA upstream 6690 4594465 ~ 4597587 (-) True CI01000018_04595424_04596449
CI01000018_04604468_04611851.mRNA mRNA upstream 16012 4603787 ~ 4611851 (-) True CI01000018_04604468_04611851
CI01000018_04627321_04645724.mRNA mRNA upstream 39394 4627169 ~ 4646182 (-) True CI01000018_04627321_04645724
CI01000018_04657706_04674073.mRNA mRNA upstream 69796 4657571 ~ 4674073 (-) True CI01000018_04657706_04674073
CI01000018_04738374_04757471.mRNA mRNA upstream 150505 4738280 ~ 4757471 (-) True CI01000018_04738374_04757471
TU119577 other downstream 338618 4243467 ~ 4246010 (-) True G105200
TU119461 other downstream 566811 4007697 ~ 4017817 (-) False G105104
TU119464 other downstream 574053 4007697 ~ 4010575 (-) True G105104
TU119324 other downstream 1084114 3482104 ~ 3500514 (-) True G104968
TU118149 other downstream 2183725 2386208 ~ 2400903 (-) True G103873
TU119553 other upstream 267306 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU120472 other upstream 1303561 5891336 ~ 6023917 (-) True G105976
TU120471 other upstream 1369831 5957606 ~ 6023917 (-) True G105976
TU121114 other upstream 1942672 6530447 ~ 6533512 (-) True G106538
TU121056 other upstream 2052837 6641872 ~ 6641956 (-) True G106487

Expression Profile