RNA id: TU120515


Basic Information

Item Value
RNA id TU120515
length 215
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G106017
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 5847345 ~ 5847559 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAAATGAAGTGGAATTCCAAGTAATTTAAGAAGACTTGCTAATAGAAAACATACCTTAAAATTAGTTAATGGATTTGGCTGATGTTCCTTCACTCATGGAAAACATAATATGCTTTGGTTATATCTCATCTCATTTATACTCTCAACTCTCCTTTCCTTCAAGTATTAAAAATGCTCATCTGGTGATGATTATTAGCATAATTTGTAATTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120511 lncRNA downstream 47959 5799157 ~ 5799386 (-) True G106013
TU120450 lncRNA downstream 125496 5721518 ~ 5721849 (-) True G105956
TU120442 lncRNA downstream 150235 5696758 ~ 5697110 (-) True G105948
TU120433 lncRNA downstream 181257 5665853 ~ 5666088 (-) True G105939
TU119933 lncRNA downstream 353239 5493836 ~ 5494106 (-) True G105526
TU120579 lncRNA upstream 195601 6043160 ~ 6043390 (-) True G106077
TU120599 lncRNA upstream 327873 6175432 ~ 6175649 (-) True G106096
TU121028 lncRNA upstream 405240 6252799 ~ 6253046 (-) True G106477
TU121030 lncRNA upstream 420908 6268467 ~ 6268704 (-) True G106479
TU121071 lncRNA upstream 533194 6380753 ~ 6383489 (-) True G106498
CI01000018_05827740_05839214.mRNA mRNA downstream 8131 5827576 ~ 5839214 (-) True CI01000018_05827740_05839214
CI01000018_05820608_05821533.mRNA mRNA downstream 25812 5819910 ~ 5821533 (-) True CI01000018_05820608_05821533
CI01000018_05803227_05816159.mRNA mRNA downstream 30852 5802909 ~ 5816493 (-) True CI01000018_05803227_05816159
CI01000018_05667742_05668807.mRNA mRNA downstream 178105 5667619 ~ 5669240 (-) True CI01000018_05667742_05668807
CI01000018_05588289_05597432.mRNA mRNA downstream 249523 5587959 ~ 5597822 (-) True CI01000018_05588289_05597432
CI01000018_05864737_05869576.mRNA mRNA upstream 16896 5864455 ~ 5869576 (-) True CI01000018_05864737_05869576
CI01000018_05870993_05880212.mRNA mRNA upstream 22754 5870313 ~ 5880705 (-) True CI01000018_05870993_05880212
CI01000018_05905787_05908656.mRNA mRNA upstream 57966 5905525 ~ 5908682 (-) True CI01000018_05905787_05908656
CI01000018_05910381_05911415.mRNA mRNA upstream 62559 5910118 ~ 5911415 (-) True CI01000018_05910381_05911415
CI01000018_05969322_05974836.mRNA mRNA upstream 121730 5969289 ~ 5975001 (-) True CI01000018_05969322_05974836
TU119553 other downstream 971506 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU119577 other downstream 1601335 4243467 ~ 4246010 (-) True G105200
TU119461 other downstream 1829528 4007697 ~ 4017817 (-) False G105104
TU119464 other downstream 1836770 4007697 ~ 4010575 (-) True G105104
TU119324 other downstream 2346831 3482104 ~ 3500514 (-) True G104968
TU120472 other upstream 43777 5891336 ~ 6023917 (-) True G105976
TU120471 other upstream 110047 5957606 ~ 6023917 (-) True G105976
TU121114 other upstream 682888 6530447 ~ 6533512 (-) True G106538
TU121056 other upstream 793053 6641872 ~ 6641956 (-) True G106487

Expression Profile