RNA id: TU120579


Basic Information

Item Value
RNA id TU120579
length 231
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G106077
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6043160 ~ 6043390 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTACTAAACTGTCCACCCATTCCTGCATCTTACTGTCAATCCTATTAAGGGGCACACTGATCAGGGCTCATTGTACCAATTTTTTCTGCATCAGGCCGACAGATTAACCGTAAGTCTCCTCTCATGACAGTGTTAAGAGTTTAAAGAGTCATACTGTCATGTATCTACAAACATAGGTCTTGAATGTTCAATGTATATGTGTGTACTTATGTATTTAAGATTTTTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120515 lncRNA downstream 195601 5847345 ~ 5847559 (-) True G106017
TU120511 lncRNA downstream 243774 5799157 ~ 5799386 (-) True G106013
TU120450 lncRNA downstream 321311 5721518 ~ 5721849 (-) True G105956
TU120442 lncRNA downstream 346050 5696758 ~ 5697110 (-) True G105948
TU120433 lncRNA downstream 377072 5665853 ~ 5666088 (-) True G105939
TU120599 lncRNA upstream 132042 6175432 ~ 6175649 (-) True G106096
TU121028 lncRNA upstream 209409 6252799 ~ 6253046 (-) True G106477
TU121030 lncRNA upstream 225077 6268467 ~ 6268704 (-) True G106479
TU121071 lncRNA upstream 337363 6380753 ~ 6383489 (-) True G106498
TU121045 lncRNA upstream 428138 6471528 ~ 6474425 (-) True G106484
CI01000018_06027217_06038423.mRNA mRNA downstream 4737 6026991 ~ 6038423 (-) True CI01000018_06027217_06038423
CI01000018_06021105_06025859.mRNA mRNA downstream 17301 6020861 ~ 6025859 (-) False CI01000018_06021105_06025859
CI01000018_05997348_06004889.mRNA mRNA downstream 38271 5997154 ~ 6004889 (-) True CI01000018_05997348_06004889
CI01000018_05993799_05995338.mRNA mRNA downstream 47822 5993741 ~ 5995338 (-) True CI01000018_05993799_05995338
CI01000018_05992061_05992357.mRNA mRNA downstream 50803 5991995 ~ 5992357 (-) True CI01000018_05992061_05992357
CI01000018_06052815_06056229.mRNA mRNA upstream 9321 6052711 ~ 6056354 (-) True CI01000018_06052815_06056229
CI01000018_06057137_06059021.mRNA mRNA upstream 13496 6056886 ~ 6059075 (-) True CI01000018_06057137_06059021
CI01000018_06066391_06085051.mRNA mRNA upstream 23001 6066391 ~ 6085051 (-) True CI01000018_06066391_06085051
CI01000018_06086167_06089014.mRNA mRNA upstream 42682 6086072 ~ 6089014 (-) True CI01000018_06086167_06089014
CI01000018_06095005_06111764.mRNA mRNA upstream 51441 6094831 ~ 6111764 (-) True CI01000018_06095005_06111764
TU120472 other downstream 17284 5891336 ~ 6023917 (-) True G105976
TU120471 other downstream 17284 5957606 ~ 6023917 (-) True G105976
TU119553 other downstream 1167321 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU119577 other downstream 1797150 4243467 ~ 4246010 (-) True G105200
TU119461 other downstream 2025343 4007697 ~ 4017817 (-) False G105104
TU121114 other upstream 487057 6530447 ~ 6533512 (-) True G106538
TU121056 other upstream 597222 6641872 ~ 6641956 (-) True G106487

Expression Profile