RNA id: TU121028


Basic Information

Item Value
RNA id TU121028
length 248
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G106477
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6252799 ~ 6253046 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAAGTCGGGCTATTAATATAAAGAAGATTCGCCTATCGGGATTGAGCGCGCGCTACCCAATCAGGTTAACGTTTTAATTAATGGGATTAAAACGGTAACAAACAATCCAAACGGGTTTCTCACAGCTTTACAAAAGCACCACGGCTCTTTCATTCCTATGCCCATCTGTGTACACACAATGAACATACAAAATCAATTTTTATGTTCTAATGTTAATGTTTCCTGGTGGGTGCTGCAGACTTCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120599 lncRNA downstream 77150 6175432 ~ 6175649 (-) True G106096
TU120579 lncRNA downstream 209409 6043160 ~ 6043390 (-) True G106077
TU120515 lncRNA downstream 405240 5847345 ~ 5847559 (-) True G106017
TU120511 lncRNA downstream 453413 5799157 ~ 5799386 (-) True G106013
TU120450 lncRNA downstream 530950 5721518 ~ 5721849 (-) True G105956
TU121030 lncRNA upstream 15421 6268467 ~ 6268704 (-) True G106479
TU121071 lncRNA upstream 127707 6380753 ~ 6383489 (-) True G106498
TU121045 lncRNA upstream 218482 6471528 ~ 6474425 (-) True G106484
TU121068 lncRNA upstream 238194 6491240 ~ 6491763 (-) True G106495
TU121115 lncRNA upstream 283297 6536343 ~ 6536648 (-) True G106539
CI01000018_06132642_06141654.mRNA mRNA downstream 111145 6132211 ~ 6141654 (-) True CI01000018_06132642_06141654
CI01000018_06095005_06111764.mRNA mRNA downstream 141035 6094831 ~ 6111764 (-) True CI01000018_06095005_06111764
CI01000018_06086167_06089014.mRNA mRNA downstream 163785 6086072 ~ 6089014 (-) True CI01000018_06086167_06089014
CI01000018_06066391_06085051.mRNA mRNA downstream 167748 6066391 ~ 6085051 (-) True CI01000018_06066391_06085051
CI01000018_06057137_06059021.mRNA mRNA downstream 193724 6056886 ~ 6059075 (-) True CI01000018_06057137_06059021
CI01000018_06353801_06362659.mRNA mRNA upstream 100676 6353722 ~ 6364041 (-) True CI01000018_06353801_06362659
CI01000018_06370452_06384112.mRNA mRNA upstream 117072 6370118 ~ 6384766 (-) True CI01000018_06370452_06384112
CI01000018_06425724_06426234.mRNA mRNA upstream 172300 6425346 ~ 6426234 (-) True CI01000018_06425724_06426234
CI01000018_06475800_06482278.mRNA mRNA upstream 222263 6475309 ~ 6482291 (-) True CI01000018_06475800_06482278
CI01000018_06484577_06490112.mRNA mRNA upstream 231531 6484577 ~ 6490112 (-) True CI01000018_06484577_06490112
TU120472 other downstream 226923 5891336 ~ 6023917 (-) True G105976
TU120471 other downstream 226923 5957606 ~ 6023917 (-) True G105976
TU119553 other downstream 1376960 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU119577 other downstream 2006789 4243467 ~ 4246010 (-) True G105200
TU119464 other downstream 2242224 4007697 ~ 4010575 (-) True G105104
TU121114 other upstream 277401 6530447 ~ 6533512 (-) True G106538
TU121056 other upstream 387566 6641872 ~ 6641956 (-) True G106487

Expression Profile