RNA id: TU121045


Basic Information

Item Value
RNA id TU121045
length 2876
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G106484
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6471528 ~ 6474425 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAATCGATTTGACAGCACTAATATATACATGTACACACAATAATTATATATTTATTACTTATGTTTATATATTTATTTATAATAAAACATACAGTAATATATTTATAAATTAATTTAAGTTTTAAAAAATGTAAAATTTATGCTGATTTTAATTGAAAAAAAAAAATCTGTTCAGACAGAATGCTTTTCATTACTGTATTACAGTAGTGAGAATTTAAGTAGGAACATGTGCTTAGTTCTCATGAAAATATCACAATGCAAACAATTTCAGTGGTCCTAAAAATAATTTTCTTAATGCAAAATCTTTTTTTTTTTTTTAATGTTTTAGGTGAAATGTGAGCAGGATATTTCCTCGTTAGATGCACCCAAATGTTTTGGGGGTCAGGGAGTATGCTGATGAACTGATGGAGGAATGCACTTTTAAACAAATCAATGTCATTTCAAATATGTATTTATTTATTTATTTGACCCCAATTTATTTGTTTTCCCTCAAGTTTTGCATTTGTGTACAAGGGGATAGGAGGTACCGATTCTGAGCTGGGCCTCAGTAGCAGCAGTACATCTCCTACATTCACTGTCAGCGGTTAGCAATACAAAGCTTCCTACAAATGTAAATGAAGAGAGACTGTGATAAACTTTGAAGAAGAATGCACCACAATAGCCTATTATAGCATTAGTGCTATAAGTCTTGTAAAAGGAAATACATTATGGACCCTGCATGGTGACATTTGATAGTAGATAGAAAGATATTTGCTTGCACACTTTGTTGGAACAAAGTTTAGGTGATTTGAGAGAGAAAATGTATAGCTAGATATAAACTCATTGAAGTGACTCCATGAAATGGCATTTTAGCTTAAAAATTACTTTTATTATACCACTACTTCTCAGTCATTCCTTTTGATGTAATTAATGTTTTCTAGAGAACTTCATCTTGAAATTATTCCTGACATGGTTCAGGACTGTTTGAATGCAGTGATTTTTTTGAAAGAGACAATAGATGAAATGCAGTGCAGCTTGTCTGGTTTTCAGGAATCAATGCTTAACTACAAGCTTAACTTTGCCCAGGCTACTTAGTTTGTCTGTTTCACTGTCTCAAAAAATACCCTGTCATTGATCACTTAAAGATTCTTTTGTACGCACAAGTATATTTAGGTGAACCTGAATGATATTTATATAGTTTTGCATATTATTTGAATTTTTGCTTTTTTAAAACTCCATTTGTTCAGTAGTTTGTTCTGCAACACTCCAGGGTGAATCTTATGAAACCGGTCAAGAACATGTCAGAATCATATTTCATCCTAAAATCTGAAGAAAAATGTATTCTGCATAAGAAAAAAAAAATATTTTTTGCATTACAGTACTGAGAATTGAGGAATAAAATCTACTAAATTCTCATTAAAATATTACAGTTTAAAAAATCTTAATGGTTCCAAAGTAGACTTTCCTCTTTAAACAAAATATAATTTTATTCTTGGATTTTGAGATGATGAAATATGATTTCCTCATGCCTTATGCTGTTGTTTTATATGGACCGATTGTATATCTGATGTTCTGTCGCTGTTCCACATGTCGGAATCTTTCCATAGAAATCGTTCAAAACCATCTACATCTGTCTTAATGCTGGTTTGTGATGTGTTTGGGGGTCTCGTGAGTCCTCGAGAACATTTTTGGTGACAAAGGGCATACAGTACCTTACATTTCACATATGTTATTGAAGTGTAGATTTCAGTATTTATTTAAAAATATTTTTAAAAGGGTTTGTTAGTTTTTATGTTTAAGTCAATGAAGAATGCACTTTGATGCCTTGAACTCAGAGCGTTAAGAAGAGCAGACTGAAGTATGCAAGCATATTCCTGTGAAACCAAGCCTTCACGGCCTTGCGTGTCGTAGTCAAGTTCAAATAGTCATCAATTTTACTAGTATACTCTCGTTTATGCATGCATAAGGTCTGTTCATACGCAGCACATTAGGAAAAACTTTTACCTACAACCATCTTGTATCTGCAAAACGGACATTTTTGTGTGACTATTGCTGTTTTTTTGGACTCTTCTTTTTTCTTGTTCTTGGCGAGTAAAACACCACTGCTTCTAGATAAATGCTGTTTGGAACAAAATATGTGTTAGATGATTTTGTGTGATGCTGACATTGACACATCAATCATCCTGATGAAGATATTGACCTGTTGACATTCCATTTGAAGTACCTATAAAAGAAGAACAATAAAGAGATCTTCCAGTACTATCATTCATTTTGTGTACTTGAATTTGTAATGAATCTCGTAGATGACAATTGTTCTGTTTCCCGGTTTATTATTTACATTTTAAGCCAGTTTTAATGTAAAAGAAAACAACATACAAACCAAAAAAAGGATTTTTACAGAGTACAGATTATGTAAATTGACGTGGCTCTTGCATACATATAATGGCATAACTAGACAAGACAGAAGGAATTACATGATGTAGATTAAGCAGCACAGATTTAATGTGATATCCCTCATTTTAGCCCCTCAGTTTGAATTACCATTTATCTAAAAGCTACTAGACCTTTTGGATGTATTATTTTTAAGACAATTCTTGATCGTACCAAAAAATCTGCAGAGAAATTGCTTTATTTTGAGGTTAAGGCTGCAGTAACACAAGTAAATGACTGTTAATGAGAATTAAACACATTCATGCACAGACAGTTTAGTGAACGCAAGCAGCCTCCTCATTGGTGCACTGATACATATTTATGAGGTGGATCAGACATCATTTTTCTTGAAAACAAGGAACAGGGATTGGTTACGTACAATATGTTACAGTAGGGCAGTCCCAATGTTCCAATCAGACCTGAGCAAGAGACGGCAGAATCAGTTCTCATCCTTTTAAACATTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121071 lncRNA downstream 88039 6380753 ~ 6383489 (-) True G106498
TU121030 lncRNA downstream 202824 6268467 ~ 6268704 (-) True G106479
TU121028 lncRNA downstream 218482 6252799 ~ 6253046 (-) True G106477
TU120599 lncRNA downstream 295879 6175432 ~ 6175649 (-) True G106096
TU120579 lncRNA downstream 428138 6043160 ~ 6043390 (-) True G106077
TU121068 lncRNA upstream 16815 6491240 ~ 6491763 (-) True G106495
TU121115 lncRNA upstream 61918 6536343 ~ 6536648 (-) True G106539
TU121117 lncRNA upstream 63458 6537883 ~ 6538167 (-) True G106541
TU121119 lncRNA upstream 66011 6540436 ~ 6540674 (-) True G106543
TU121046 lncRNA upstream 71424 6545849 ~ 6547225 (-) True CI01000018_06547019_06585316
CI01000018_06425724_06426234.mRNA mRNA downstream 45294 6425346 ~ 6426234 (-) True CI01000018_06425724_06426234
CI01000018_06370452_06384112.mRNA mRNA downstream 86762 6370118 ~ 6384766 (-) True CI01000018_06370452_06384112
CI01000018_06353801_06362659.mRNA mRNA downstream 107487 6353722 ~ 6364041 (-) True CI01000018_06353801_06362659
CI01000018_06132642_06141654.mRNA mRNA downstream 329874 6132211 ~ 6141654 (-) True CI01000018_06132642_06141654
CI01000018_06095005_06111764.mRNA mRNA downstream 359764 6094831 ~ 6111764 (-) True CI01000018_06095005_06111764
CI01000018_06475800_06482278.mRNA mRNA upstream 884 6475309 ~ 6482291 (-) True CI01000018_06475800_06482278
CI01000018_06484577_06490112.mRNA mRNA upstream 10152 6484577 ~ 6490112 (-) True CI01000018_06484577_06490112
CI01000018_06493607_06502730.mRNA mRNA upstream 18920 6493345 ~ 6502730 (-) True CI01000018_06493607_06502730
CI01000018_06503908_06515370.mRNA mRNA upstream 29357 6503782 ~ 6515370 (-) True CI01000018_06503908_06515370
CI01000018_06547019_06585316.mRNA mRNA upstream 71961 6546386 ~ 6585316 (-) False CI01000018_06547019_06585316
TU120472 other downstream 445652 5891336 ~ 6023917 (-) True G105976
TU120471 other downstream 445652 5957606 ~ 6023917 (-) True G105976
TU119553 other downstream 1595689 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU119577 other downstream 2225518 4243467 ~ 4246010 (-) True G105200
TU119464 other downstream 2460953 4007697 ~ 4010575 (-) True G105104
TU121114 other upstream 56022 6530447 ~ 6533512 (-) True G106538
TU121056 other upstream 166187 6641872 ~ 6641956 (-) True G106487

Expression Profile