RNA id: CI01000020_00603718_00606833.mRNA



Basic Information


Item Value
RNA id CI01000020_00603718_00606833.mRNA
length 1161
RNA type mRNA
GC content 0.37
exon number 4
gene id CI01000020_00603718_00606833
representative True

Chromosome Information


Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 603586 ~ 607523 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTAAAAGAAAGTCAACTGAATAAGCTTTGAGTAACTTGGGTACTTGTAGGAAATTCTCATTGATGAAATGGATAGTTAACATCTTTTTTGTCTTGTTTCTTTCTCAGGTAGTTAACGGATACACTGCACAATGCGTGAATACAAGTTAGTAGTCCTTGGATCAGGAGGTGTCGGCAAGTCTGCGCTGCTGTACAGCGTCCCAGGAGAACATCTGTCTCCAATCAGGTCGGTAAAGGTTGTGAGAACTAAACTGGCCTCTGTGAACTTAAATGGCTCACCCATTGGAGAGCAGCCACAATGGCCCGACCCACTCACCTCGGGGCTCAACAAAGAGCCCATTGCCTGTATGTGTGCCACAGGACAGCGGGAAAAAGACAGGTCTGTAAAATCAGATCATTACTATGTGGGGTCAGCCTGGTGTCCTGTAATGGAGCTATATAGACTGCAACAATGGACGCCCGCTTTATAAGACGCCCGCAAATCTGCCAGAAAAACAAATACAGGACTTACCGAAATGAATTAACTACTTGTCCTGTAAAGAATGGTACATTGTGTATTCAAACAAGTCTTTTTAAAGTAATTTTTTCAGGAATCATCACTGTTGTATTGTTTGCGCTGATTCTACATCAAAACAATCTACTGTAGCAACACATTGCTCTATTCATTTGAGTCTGATTTTTTTCGACCAACCATACACATCAACACTGGCTCAACCAATGCTGTGAGTTTGGGGTGGCACTTCCTGTTTGGGCCAACCAATGGCAGATGGGGGAATGTATTGGAAACCTGCTTAAATTCTGTTTGGTGACACCAGTGGCCCATAAATTATATATTTTATGGTCAAAGACATGCTGTGACATGTTCTTTTTTCTATTTTCTTTTGTCTGGATCTATACATTTATTCAGTAATACATAAAAATGCAATTATACATATAATGACTCAAATACATTTTTTTTTTTTCATCAAATACATCATTTTTTCCACTCATTTTGATTTTTTGATTTTTTTTTTTTTTACAAAATTATGGAAGTATAAATATAGATATATGAACAACGTTTTGTGAAATGTTTGATTTAAAAAAAAATATATTCATTTTTTCAAAACTACACTATCATTCAAAAGCTTTTTTATGTTTTTGAAGAAAGTCAGCAACATTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU125798 lncRNA upstream 43379 558921 ~ 560207 (+) True G110714
TU125869 lncRNA upstream 47317 556039 ~ 556269 (+) True G110783
TU125866 lncRNA upstream 50146 553189 ~ 553440 (+) True G110780
TU125818 lncRNA upstream 60450 542600 ~ 543136 (+) True G110732
TU125813 lncRNA upstream 62508 453183 ~ 541078 (+) True G110727
TU125809 lncRNA downstream 146930 754453 ~ 788626 (+) True G110723
TU125827 lncRNA downstream 280605 888128 ~ 888384 (+) True G110741
TU125900 lncRNA downstream 285419 892942 ~ 893173 (+) True G110808
TU125914 lncRNA downstream 361870 969393 ~ 970349 (+) True G110822
TU125828 lncRNA downstream 367348 974871 ~ 975583 (+) True G110742
CI01000020_00536611_00538626.mRNA mRNA upstream 64604 534934 ~ 538982 (+) True CI01000020_00536611_00538626
CI01000020_00501322_00502978.mRNA mRNA upstream 100467 501190 ~ 503119 (+) True CI01000020_00501322_00502978
CI01000020_00466505_00489442.mRNA mRNA upstream 113922 466276 ~ 489664 (+) True CI01000020_00466505_00489442
CI01000020_00250359_00289375.mRNA mRNA upstream 314211 250359 ~ 289375 (+) True CI01000020_00250359_00289375
CI01000020_00126243_00220377.mRNA mRNA upstream 382126 126243 ~ 221460 (+) True CI01000020_00126243_00220377
CI01000020_00621182_00624570.mRNA mRNA downstream 13659 621182 ~ 625201 (+) True CI01000020_00621182_00624570
CI01000020_00631105_00635541.mRNA mRNA downstream 23582 631105 ~ 635541 (+) True CI01000020_00631105_00635541
CI01000020_00643857_00646974.mRNA mRNA downstream 36334 643857 ~ 647559 (+) True CI01000020_00643857_00646974
CI01000020_00701439_00712656.mRNA mRNA downstream 93916 701439 ~ 712825 (+) True CI01000020_00701439_00712656
CI01000020_00715984_00729331.mRNA mRNA downstream 108461 715984 ~ 729961 (+) True CI01000020_00715984_00729331
TU125672 other upstream 376738 180778 ~ 226848 (+) False G110589
TU125671 other upstream 376738 222131 ~ 226848 (+) True G110589
TU125641 other upstream 555546 30693 ~ 48040 (+) True G110562
TU125804 other downstream 203376 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125806 other downstream 460533 1068056 ~ 1086773 (+) True G110720
TU126005 other downstream 768846 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU126322 other downstream 1836721 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 1836721 2445064 ~ 2449807 (+) True G111173

Expression Profile