RNA id: CI01000020_00810993_00815495.mRNA



Basic Information


Item Value
RNA id CI01000020_00810993_00815495.mRNA
length 588
RNA type mRNA
GC content 0.45
exon number 3
gene id CI01000020_00810993_00815495
representative False

Chromosome Information


Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 810899 ~ 816510 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GATGAGGACCGCGCTTTAGTGCGAATGGATTTTACCGAAGGATCCGCGCTCGGCGTGTTCACCTGTGAGCTGTGCGAGCTGTCCAGTCCGTACAGTTTCTACGGGCAGAAGCCGCCAAACACGAGAGCAATAGTGCTCTTAGAGGAATGTTATGGCATGAAGGATCCCTTCAGCCCGGAGAGAGAGAAGTTTCTTGTTCTAGGATCCAAGTGCTGTCTGTGCAGTAAGACGGTGTGTGTGGGAACGGACTGCAGTCTGTTCTACACCAAACGCTTTTGTTTGCCATGCGTGCGGGATCACCTTCATCAGTTTCCAGAACAGGTTCAAAATGAGGTGCTGAGGAAGAAAAGTGTGCAGAAGACGTCCGCCTCATGATGATATATTGATTTATTTATGAACAGAGGACACTAGTGAACCATCTGGCCAGACACACATGTACATTTTTTTTTGTCTGTTGTCCTTTTTCTATTTATATGAATCAAACAACTGAAGGTGGCAAGCCATCTTTTGATTGAAACCATATGTTATGTGACATTTTTAGTTTTACAATAGCACTAAATGTGTTGTCTTACGTGTAGAAACTATGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU125809 lncRNA upstream 22367 754453 ~ 788626 (+) True G110723
TU125798 lncRNA upstream 250786 558921 ~ 560207 (+) True G110714
TU125869 lncRNA upstream 254724 556039 ~ 556269 (+) True G110783
TU125866 lncRNA upstream 257553 553189 ~ 553440 (+) True G110780
TU125818 lncRNA upstream 267857 542600 ~ 543136 (+) True G110732
TU125827 lncRNA downstream 72420 888128 ~ 888384 (+) True G110741
TU125900 lncRNA downstream 77234 892942 ~ 893173 (+) True G110808
TU125914 lncRNA downstream 153685 969393 ~ 970349 (+) True G110822
TU125828 lncRNA downstream 159163 974871 ~ 975583 (+) True G110742
TU125824 lncRNA downstream 159961 975669 ~ 976633 (+) True G110738
CI01000020_00798124_00809552.mRNA mRNA upstream 936 797612 ~ 810057 (+) True CI01000020_00798124_00809552
CI01000020_00752731_00769950.mRNA mRNA upstream 40966 752694 ~ 770027 (+) False CI01000020_00752731_00769950
CI01000020_00715984_00729331.mRNA mRNA upstream 81032 715984 ~ 729961 (+) True CI01000020_00715984_00729331
CI01000020_00701439_00712656.mRNA mRNA upstream 98168 701439 ~ 712825 (+) True CI01000020_00701439_00712656
CI01000020_00643857_00646974.mRNA mRNA upstream 163434 643857 ~ 647559 (+) True CI01000020_00643857_00646974
CI01000020_00819154_00820506.mRNA mRNA downstream 3141 818849 ~ 821273 (+) True CI01000020_00819154_00820506
CI01000020_00892454_00900973.mRNA mRNA downstream 76746 892454 ~ 901051 (+) True CI01000020_00892454_00900973
CI01000020_00934438_00935330.mRNA mRNA downstream 118730 934438 ~ 935356 (+) True CI01000020_00934438_00935330
CI01000020_00949140_00951237.mRNA mRNA downstream 133048 948756 ~ 952785 (+) True CI01000020_00949140_00951237
CI01000020_00959078_00971223.mRNA mRNA downstream 143370 959078 ~ 971999 (+) True CI01000020_00959078_00971223
TU125672 other upstream 584145 180778 ~ 226848 (+) False G110589
TU125671 other upstream 584145 222131 ~ 226848 (+) True G110589
TU125641 other upstream 762953 30693 ~ 48040 (+) True G110562
TU125806 other downstream 252348 1068056 ~ 1086773 (+) True G110720
TU126005 other downstream 560661 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU126322 other downstream 1628536 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 1628536 2445064 ~ 2449807 (+) True G111173
TU126334 other downstream 1831803 2647511 ~ 2658913 (+) True G111183

Expression Profile