RNA id: CI01000020_00819154_00820506.mRNA


Basic Information

Item Value
RNA id CI01000020_00819154_00820506.mRNA
length 1591
RNA type mRNA
GC content 0.44
exon number 2
gene id CI01000020_00819154_00820506
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 818849 ~ 821273 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAAATAGCCTCTGCTGTCAATCTTTTTTTCCCCTGCCAGTTTACTTGCGATCGCCATATTGGGTGCTCGCCTACTCGAATGACTTGTCTGTTTTTCTTCGGAATTACTACGAGACGGGATCGGAGGCGCGCGCTGTTTTCATGACTTGTTTTCCACGCGCTCTAGTCTTTCTACACGCATTCGCGCGTTTGTTATGCGTGCGCTCTGCGACTCGCTCGGCTTTCTTGGGAGGGATCGCTTTTAGTTAGACTGCGTCTGGCTCGATTGCGACTGCGAATCTCGGACAAACTTTCATGTGCAAAATGTCAAAAGTGCGCGTCTCCAATGGAAGTCCTACGCTGGAGAGGGTGGACGCGAGGCAGGCGGACCATGCCAAACCGCCGGTCTGCCGAAATCTCTTCGGCACCGTGGATCGCGAAGAGTTCGCCAGGGACGTCGAGGAGCAAATGCGGGAGATAGAGAAAGCGTCCAAAGATAAATGGAATTACGACTTCGCTAAGAACGAGCCGCTCGCGCCGGGCAACTACGAGTGGCAGGAGGTGGACGCCAAAGAGGTGCCGGAGTTTTACATCAGACCGCCTCACGTAAAACGGGCTACCTCTACCGGGACTGTGGACCATAACGGGAACCACGATTATTTGTTGACAACTCCCTCCCTGGAGAGCGTAGGGGGGGACTCTGACAGCACGGAGACCGGGAGTCGGACGGACTGCCGAACGGCGCTCTCCACGCCGAGGAAAAGACCGTCGACAGAGGATCAGGAGAGAGAGATGAAGACTCCTATTTTCTCCATCAAATACTTCAAGAGCTTTATGAAGTAAACAGGGACAGCTGTTGAAAAGTACAAAACGAGCCTTGGAGAGGCTGTATAAGCACTGAATTTTTACACTAATGTTTTGGCACTCGACAGAATATATTTGCCTCAAAAGCAGACGATGTAGCAGTGTGCAATTGGAGTTGCTTCATTTGTTCTTTTACTACCTATGTATATACTTTCATTTTATATGTAGCACATTTTAAATGTAATATTAAGATAAAAAAACAATCATTTATAAATGGAGTGCGTTTGACTTGAAGAATTGCTGTGCAGTTTTTAAACGTCTCCCCGAAATTAACCCTTTTAAAGTAAATATCTATGTGTACACACACACACACACACACACACACACACACACACCATTTCCCTTTAATTAGGTTAAACAATCCCATTGTCTCAGTTTTGGCTGGCTCAGGATGTTAACGTTCAAAAGTACAATTAATGCGTATCAGTGCTCAACAGCAGCCACAATTTTGGCCATTTTTAAGTTGCACAAATGTCACTGTCTGCATTAATGCCATTTATGTTTATTGGTACTTAATATGATTTTACCAGCCAAGGTTACAGCACTTGGTCATGGGGTGTTCTTCTCTGAAGGGAATGTGACTCCTAGTGTGGTATTAAGGTTTTCATGCTTCTTTACAGTATTATATCCCTGGGTTATTCCACTAATTTTATTTTCTTTTATTTAAATTATTTCATTTTTTTTCTTTTGTTATTTTGGCATAATGATATAAATTCTCATGAACTACAAATCCTACTGAGTACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125809 lncRNA upstream 30223 754453 ~ 788626 (+) True G110723
TU125798 lncRNA upstream 258642 558921 ~ 560207 (+) True G110714
TU125869 lncRNA upstream 262580 556039 ~ 556269 (+) True G110783
TU125866 lncRNA upstream 265409 553189 ~ 553440 (+) True G110780
TU125818 lncRNA upstream 275713 542600 ~ 543136 (+) True G110732
TU125827 lncRNA downstream 66855 888128 ~ 888384 (+) True G110741
TU125900 lncRNA downstream 71669 892942 ~ 893173 (+) True G110808
TU125914 lncRNA downstream 148120 969393 ~ 970349 (+) True G110822
TU125828 lncRNA downstream 153598 974871 ~ 975583 (+) True G110742
TU125824 lncRNA downstream 154396 975669 ~ 976633 (+) True G110738
CI01000020_00810993_00815495.mRNA mRNA upstream 3141 810993 ~ 815708 (+) False CI01000020_00810993_00815495
CI01000020_00798124_00809552.mRNA mRNA upstream 8792 797612 ~ 810057 (+) True CI01000020_00798124_00809552
CI01000020_00752731_00769950.mRNA mRNA upstream 48822 752694 ~ 770027 (+) False CI01000020_00752731_00769950
CI01000020_00715984_00729331.mRNA mRNA upstream 88888 715984 ~ 729961 (+) True CI01000020_00715984_00729331
CI01000020_00701439_00712656.mRNA mRNA upstream 106024 701439 ~ 712825 (+) True CI01000020_00701439_00712656
CI01000020_00892454_00900973.mRNA mRNA downstream 71181 892454 ~ 901051 (+) True CI01000020_00892454_00900973
CI01000020_00934438_00935330.mRNA mRNA downstream 113165 934438 ~ 935356 (+) True CI01000020_00934438_00935330
CI01000020_00949140_00951237.mRNA mRNA downstream 127483 948756 ~ 952785 (+) True CI01000020_00949140_00951237
CI01000020_00959078_00971223.mRNA mRNA downstream 137805 959078 ~ 971999 (+) True CI01000020_00959078_00971223
CI01000020_01083614_01106789.mRNA mRNA downstream 261957 1083230 ~ 1107257 (+) False CI01000020_01083614_01106789
TU125804 other upstream 2339 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125672 other upstream 592001 180778 ~ 226848 (+) False G110589
TU125671 other upstream 592001 222131 ~ 226848 (+) True G110589
TU125641 other upstream 770809 30693 ~ 48040 (+) True G110562
TU125806 other downstream 246783 1068056 ~ 1086773 (+) True G110720
TU126005 other downstream 555096 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU126322 other downstream 1622971 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 1622971 2445064 ~ 2449807 (+) True G111173
TU126334 other downstream 1826238 2647511 ~ 2658913 (+) True G111183

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00055673 False 2280 mRNA 0.45 3 NC_007115.7 18592743 ~ 18595525 (-)