RNA id: TU125806



Basic Information


Item Value
RNA id TU125806
length 223
RNA type TUCP
GC content 0.46
exon number 2
gene id G110720
representative True

Chromosome Information


Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 1068056 ~ 1086773 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCACCAGCAGTGCAGAAACCCTTCACTCGGCCTTTAACTGTACTGATGTCGTACAGAGCCAGCGCGGTGTTCTCCGGATCCTGCTGATTCTGCGCACTGAACACACCTGCCCAAATAACGCCGTTCACTGAGGGAATAACGGTGGAGGCGACGAGCACTGGACGAGCTTTATCATTGCAGNNNTGTTCAGTGCGCAGAATCAGCAGGATCCGGAGAACACCGCGCTGGCTCTGTACGACATCAGTACAGTTAAAGGCCGAGTGAAGGGTTTCTGCACTGTTGGTGAACTGCCATGTGGTTCTGAGAAAGGTAGTGCACTTCAGCCGCTCTCTGTGGTGTTCAAGTACAGCTCAATGTCATCAGTGGCAGCAGTTAGAAATGGATCCTGGATTGTGATGTTCATAGGAACCAGTGATGGACAACTGATAAAGCTGATCTTGAATGAGAAATTCACACCAGGTTGTTCAACAGTGCTGTACAAATCTGATGATGAACGAGCAGTGCTACCCAGAATGCACTTTGATCCAGTAGATTTCAAACATATTTACATCGCTCTGAGGAAACAGCTCAGAAGAGTGTCTGTGGTTCAGTGTGTTAAATACAGCACTGTGAAAGACTGCAGAGCTGCTCTGGATCCTCTCTGCGGCTGGTGTGTGAAAACAAAGAGATGTTCTACTCAAGATGAATGCTCAAATACTTCATGGGTGTCCATCCCAAAAAACTCTCTTCAGACGCAGCTGCTTTCCTTTCAGATGATAGAGAATTCTTCTAGAAAGATTACTCTACATCTTGCCTTGAGTCTGGAGAGCACAGGAAATCCCGTCTTCTCGTGTTCCTTCACCACAGGAAGTGTGAACATGTGTGACGGGTCTGATCTGACTGCAGTTTTCCCAAACTGCTCCTGTAGTTTTTCTGACCAGCTACTATATACTGGAGGTTTAACAGTCTCTGCTACAGTTACTATTGAGGATCAGAAGATCACAGAGACGCTGACACTGAGGAACTGCTCCAGTATCACAGATAATTCACCAAATGCTTCTTATACACAGTGTGCACAGTGTATCTCANNNNNNNNNNNNNNNNNNNNNNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU125934 lncRNA upstream 1891 1027444 ~ 1066165 (+) False G110836
TU125935 lncRNA upstream 2067 1053837 ~ 1065989 (+) True G110836
TU125936 lncRNA upstream 40194 1027444 ~ 1027862 (+) False G110836
TU125824 lncRNA upstream 91423 975669 ~ 976633 (+) True G110738
TU125828 lncRNA upstream 92473 974871 ~ 975583 (+) True G110742
TU126004 lncRNA downstream 287684 1374457 ~ 1374879 (+) False CI01000020_01375811_01378288
TU126006 lncRNA downstream 292905 1379678 ~ 1379912 (+) True G110891
TU126007 lncRNA downstream 293439 1380212 ~ 1380452 (+) True G110892
TU126025 lncRNA downstream 300565 1387338 ~ 1387541 (+) True G110908
TU126026 lncRNA downstream 300836 1387609 ~ 1387903 (+) True G110909
CI01000020_00959078_00971223.mRNA mRNA upstream 96057 959078 ~ 971999 (+) True CI01000020_00959078_00971223
CI01000020_00949140_00951237.mRNA mRNA upstream 115271 948756 ~ 952785 (+) True CI01000020_00949140_00951237
CI01000020_00934438_00935330.mRNA mRNA upstream 132700 934438 ~ 935356 (+) True CI01000020_00934438_00935330
CI01000020_00892454_00900973.mRNA mRNA upstream 167005 892454 ~ 901051 (+) True CI01000020_00892454_00900973
CI01000020_00819154_00820506.mRNA mRNA upstream 246783 818849 ~ 821273 (+) True CI01000020_00819154_00820506
CI01000020_01120223_01142481.mRNA mRNA downstream 33450 1120223 ~ 1142573 (+) True CI01000020_01120223_01142481
CI01000020_01147997_01150696.mRNA mRNA downstream 60772 1147545 ~ 1150963 (+) True CI01000020_01147997_01150696
CI01000020_01187688_01253805.mRNA mRNA downstream 100806 1187579 ~ 1254010 (+) True CI01000020_01187688_01253805
CI01000020_01275836_01316392.mRNA mRNA downstream 189063 1275836 ~ 1316392 (+) True CI01000020_01275836_01316392
CI01000020_01341579_01343530.mRNA mRNA downstream 254120 1340893 ~ 1344046 (+) True CI01000020_01341579_01343530
TU125804 other upstream 251546 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125672 other upstream 841208 180778 ~ 226848 (+) False G110589
TU125671 other upstream 841208 222131 ~ 226848 (+) True G110589
TU125641 other upstream 1020016 30693 ~ 48040 (+) True G110562
TU126005 other downstream 289596 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU126322 other downstream 1357471 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 1357471 2445064 ~ 2449807 (+) True G111173
TU126334 other downstream 1560738 2647511 ~ 2658913 (+) True G111183
TU128026 other downstream 2214398 3301171 ~ 3303730 (+) True G112679

Expression Profile