RNA id: TU126005


Basic Information

Item Value
RNA id TU126005
length 430
RNA type TUCP
GC content 0.47
exon number 2
gene id CI01000020_01375811_01378288
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 1373164 ~ 1379068 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCAAAATATACATAACGTGGATCACTTTATCCGTGTTTGTTCTGCCAGCCTTAATCTTGATGTATTGTCAGATAAAGATATGCGCAGGGATCTATTTCAACATGAAGAGGAAAGCCTTGCAGGGCAGCACAGGTGATGGGCGCTCCAGCACTAAAGGGATATCAAGCGCAATGCTGAAAACTGTCAAAATGACTTTTATTATCATCCTGGTGTACACCCTCTGCTGGAGCCCATTCTTCGTGGTCCAGCTCTGGTCAGCTTGGAGTCCAAGCAGTGCACCCACGCAAGGGCCAGTGTTTGTCACTATCATGCTCCTTGCCAGTCTTAACAGCTGCACAAACCCATGGATCTACCTGTACTACAGCTAGAACCTCACGCGCAAGTTCTTGCTGCTGAAGAGTGCATGAATATGGTCATGGCATAATTCGG

Function

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04228 AVPR2; arginine vasopressin receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126004 lncRNA upstream 1490 1374457 ~ 1374879 (+) False CI01000020_01375811_01378288
TU125829 lncRNA upstream 307485 1057441 ~ 1068884 (+) True G110743
TU125934 lncRNA upstream 310204 1027444 ~ 1066165 (+) False G110836
TU125935 lncRNA upstream 310380 1053837 ~ 1065989 (+) True G110836
TU125936 lncRNA upstream 348507 1027444 ~ 1027862 (+) False G110836
TU126006 lncRNA downstream 1329 1379678 ~ 1379912 (+) True G110891
TU126007 lncRNA downstream 1863 1380212 ~ 1380452 (+) True G110892
TU126025 lncRNA downstream 8989 1387338 ~ 1387541 (+) True G110908
TU126026 lncRNA downstream 9260 1387609 ~ 1387903 (+) True G110909
TU126014 lncRNA downstream 89835 1468184 ~ 1476360 (+) True G110897
CI01000020_01341579_01343530.mRNA mRNA upstream 32323 1340893 ~ 1344046 (+) True CI01000020_01341579_01343530
CI01000020_01275836_01316392.mRNA mRNA upstream 59977 1275836 ~ 1316392 (+) True CI01000020_01275836_01316392
CI01000020_01187688_01253805.mRNA mRNA upstream 122359 1187579 ~ 1254010 (+) True CI01000020_01187688_01253805
CI01000020_01147997_01150696.mRNA mRNA upstream 225406 1147545 ~ 1150963 (+) True CI01000020_01147997_01150696
CI01000020_01120223_01142481.mRNA mRNA upstream 233796 1120223 ~ 1142573 (+) True CI01000020_01120223_01142481
CI01000020_01383268_01384854.mRNA mRNA downstream 4919 1383268 ~ 1386041 (+) True CI01000020_01383268_01384854
CI01000020_01395424_01397266.mRNA mRNA downstream 16777 1395126 ~ 1397343 (+) True CI01000020_01395424_01397266
CI01000020_01400705_01401757.mRNA mRNA downstream 19947 1398296 ~ 1402082 (+) True CI01000020_01400705_01401757
CI01000020_01416902_01441420.mRNA mRNA downstream 38553 1416902 ~ 1441556 (+) True CI01000020_01416902_01441420
CI01000020_01447228_01456657.mRNA mRNA downstream 68055 1446404 ~ 1457595 (+) True CI01000020_01447228_01456657
TU125806 other upstream 289596 1068056 ~ 1086773 (+) True G110720
TU125804 other upstream 559859 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125672 other upstream 1149521 180778 ~ 226848 (+) False G110589
TU125671 other upstream 1149521 222131 ~ 226848 (+) True G110589
TU125641 other upstream 1328329 30693 ~ 48040 (+) True G110562
TU126322 other downstream 1065895 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 1065895 2445064 ~ 2449807 (+) True G111173
TU126334 other downstream 1269162 2647511 ~ 2658913 (+) True G111183
TU128026 other downstream 1922822 3301171 ~ 3303730 (+) True G112679
TU128103 other downstream 2336032 3714381 ~ 3733586 (+) True G112753

Expression Profile