RNA id: CI01000020_02179764_02185141.mRNA



Basic Information


Item Value
RNA id CI01000020_02179764_02185141.mRNA
length 589
RNA type mRNA
GC content 0.47
exon number 2
gene id CI01000020_02179764_02185141
representative True

Chromosome Information


Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 2179419 ~ 2185166 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTAAAAGGTAGCCTACGGCTTACATCACTGCACGTTCCCTCTCTTATGGTCAAACATTTGAAAGGACACGATTGGCTGAGTGTGATCAGCTGAAGCGCTGCGTCAATGCGAGCAGGAGTGCGCTCGTGAAAGCAGCTACAACTCAGAGACACAGCAGCAAACGCTCTTCAAACCAAATTAGATCACCATAGACTGCTTTCCGAAGCTTACTCCACGAAATCATAGTGATTAGTGTTTATTACAACCGCGCTTTAAGTTCATTTCATTTGCCTGGGGACGCTGGATATGGAGCTGGTTGGGTCTGAATAACAAACGCACACAAAGCGGATCAGCTCGAGCCGAGATGAGCGCGACTATGAGCGGCTCTGGGTCAGCGCCCTGTCGCTTCGCACATTACTTCATCATATGCGGAATAGACAACGAAACGGGTCTAGAGCCCGATGCTTTGGCAGGCTCATTCTCATTAGTCAGTCTCTTTAGCTACCTCTTATATTCAACTATGGATGTTGGTGGTTTCTTAGAAGGCCTGGCTGTCAAACATATTCTAGGCCTAAGGGTGTAGTATATGTCCTCTGAGTAGGATAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126188 lncRNA upstream 23332 2153800 ~ 2156087 (+) True G111049
TU126183 lncRNA upstream 108658 2064054 ~ 2070761 (+) True G111044
TU126223 lncRNA upstream 154504 2024670 ~ 2024915 (+) True G111084
TU126167 lncRNA upstream 402935 1775994 ~ 1776484 (+) True G111028
TU126095 lncRNA upstream 454297 1715495 ~ 1725122 (+) True G110967
TU126177 lncRNA downstream 43464 2228630 ~ 2229561 (+) True G111038
TU126285 lncRNA downstream 140102 2325268 ~ 2325492 (+) True G111141
TU126288 lncRNA downstream 144119 2329285 ~ 2329506 (+) True G111144
TU126304 lncRNA downstream 189914 2375080 ~ 2376491 (+) True G111160
TU126308 lncRNA downstream 221065 2406231 ~ 2406463 (+) True G111164
CI01000020_02124037_02139813.mRNA mRNA upstream 39589 2123158 ~ 2139830 (+) True CI01000020_02124037_02139813
CI01000020_02113206_02120765.mRNA mRNA upstream 58214 2113164 ~ 2121205 (+) True CI01000020_02113206_02120765
CI01000020_02105070_02110245.mRNA mRNA upstream 69100 2104226 ~ 2110319 (+) True CI01000020_02105070_02110245
CI01000020_02083977_02102990.mRNA mRNA upstream 75937 2083977 ~ 2103482 (+) True CI01000020_02083977_02102990
CI01000020_02079089_02081777.mRNA mRNA upstream 97569 2079089 ~ 2081850 (+) True CI01000020_02079089_02081777
CI01000020_02199397_02227367.mRNA mRNA downstream 13748 2198914 ~ 2227529 (+) True CI01000020_02199397_02227367
CI01000020_02233314_02238917.mRNA mRNA downstream 48148 2233314 ~ 2239889 (+) True CI01000020_02233314_02238917
CI01000020_02243585_02253875.mRNA mRNA downstream 58419 2243585 ~ 2254571 (+) True CI01000020_02243585_02253875
CI01000020_02292816_02297112.mRNA mRNA downstream 107193 2292359 ~ 2297830 (+) True CI01000020_02292816_02297112
CI01000020_02351020_02353651.mRNA mRNA downstream 165854 2351020 ~ 2354384 (+) True CI01000020_02351020_02353651
TU126005 other upstream 801070 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU125806 other upstream 1092646 1068056 ~ 1086773 (+) True G110720
TU125804 other upstream 1362909 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125672 other upstream 1952571 180778 ~ 226848 (+) False G110589
TU126322 other downstream 259078 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 259078 2445064 ~ 2449807 (+) True G111173
TU126334 other downstream 462345 2647511 ~ 2658913 (+) True G111183
TU128026 other downstream 1116005 3301171 ~ 3303730 (+) True G112679
TU128103 other downstream 1529215 3714381 ~ 3733586 (+) True G112753

Expression Profile