Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU127991 |
| length | 1258 |
| lncRNA type | sense_over |
| GC content | 0.44 |
| exon number | 3 |
| gene id | G112653 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000020 |
| NCBI id | null |
| chromosome length | 7209782 |
| location | 3194177 ~ 3198838 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU126458 | lncRNA | upstream | 126367 | 3029927 ~ 3067810 (+) | True | G111287 |
| TU126459 | lncRNA | upstream | 179285 | 3003380 ~ 3014892 (+) | True | G111288 |
| TU126510 | lncRNA | upstream | 233110 | 2960859 ~ 2961067 (+) | True | G111331 |
| TU126505 | lncRNA | upstream | 256800 | 2937171 ~ 2937377 (+) | True | G111326 |
| TU126498 | lncRNA | upstream | 262487 | 2931301 ~ 2931690 (+) | True | G111324 |
| TU128003 | lncRNA | downstream | 10602 | 3209440 ~ 3209712 (+) | True | G112659 |
| TU128046 | lncRNA | downstream | 63624 | 3262462 ~ 3262672 (+) | True | G112699 |
| TU128049 | lncRNA | downstream | 85863 | 3284701 ~ 3284907 (+) | True | G112702 |
| TU128034 | lncRNA | downstream | 104967 | 3303805 ~ 3304620 (+) | True | G112687 |
| TU128063 | lncRNA | downstream | 123985 | 3322823 ~ 3325360 (+) | True | G112716 |
| CI01000020_02983105_03176041.mRNA | mRNA | upstream | 18136 | 2983105 ~ 3176041 (+) | True | CI01000020_02983105_03176041 |
| CI01000020_02865197_02919405.mRNA | mRNA | upstream | 274772 | 2865197 ~ 2919405 (+) | True | CI01000020_02865197_02919405 |
| CI01000020_02633932_02637797.mRNA | mRNA | upstream | 556171 | 2633932 ~ 2638006 (+) | True | CI01000020_02633932_02637797 |
| CI01000020_02627995_02631513.mRNA | mRNA | upstream | 562307 | 2627995 ~ 2631870 (+) | True | CI01000020_02627995_02631513 |
| CI01000020_02569281_02578301.mRNA | mRNA | upstream | 615336 | 2568613 ~ 2578841 (+) | True | CI01000020_02569281_02578301 |
| CI01000020_03264878_03271412.mRNA | mRNA | downstream | 65279 | 3264117 ~ 3272069 (+) | True | CI01000020_03264878_03271412 |
| CI01000020_03343617_03348546.mRNA | mRNA | downstream | 144779 | 3343617 ~ 3348555 (+) | True | CI01000020_03343617_03348546 |
| CI01000020_03379393_03391963.mRNA | mRNA | downstream | 180555 | 3379393 ~ 3393102 (+) | True | CI01000020_03379393_03391963 |
| CI01000020_03397866_03404516.mRNA | mRNA | downstream | 199028 | 3397866 ~ 3404710 (+) | True | CI01000020_03397866_03404516 |
| CI01000020_03405045_03408250.mRNA | mRNA | downstream | 206207 | 3405045 ~ 3408273 (+) | True | CI01000020_03405045_03408250 |
| TU126334 | other | upstream | 535264 | 2647511 ~ 2658913 (+) | True | G111183 |
| TU126324 | other | upstream | 744370 | 2445064 ~ 2449807 (+) | True | G111173 |
| TU126322 | other | upstream | 748621 | 2445064 ~ 2445556 (+) | False | G111173 |
| TU126005 | other | upstream | 1815828 | 1376369 ~ 1378349 (+) | True | CI01000020_01375811_01378288 |
| TU125806 | other | upstream | 2107404 | 1068056 ~ 1086773 (+) | True | G110720 |
| TU128026 | other | downstream | 102333 | 3301171 ~ 3303730 (+) | True | G112679 |
| TU128103 | other | downstream | 515543 | 3714381 ~ 3733586 (+) | True | G112753 |
| TU128448 | other | downstream | 1227820 | 4426658 ~ 4439762 (+) | True | G113050 |
| TU128442 | other | downstream | 1561174 | 4785073 ~ 4793261 (+) | True | G113044 |
| TU128430 | other | downstream | 1608189 | 4807027 ~ 4808872 (+) | False | CI01000020_04807118_04808453 |
