RNA id: CI01000020_03264878_03271412.mRNA


Basic Information

Item Value
RNA id CI01000020_03264878_03271412.mRNA
length 2843
RNA type mRNA
GC content 0.42
exon number 10
gene id CI01000020_03264878_03271412
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3264117 ~ 3272069 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATATATGCTGTTAATAATATTGAATACTTACATATCCTTTTGGGTAAATACTGAAAGCAGTCAGTTTTACAGTCTCCAGCCAAAACATTATCACTGTTTAAAAAAAAAAAGAATATTATGAAAAAATATTGATTGTCATGGTTAGTGCCCCCTACTGGAGTGATATTTAAAGCAATGCAAATAGATGCAGTGCTTTATGAAAATGGTTATCAGATAACATGTGAAAAGAAAGAGGAGACCCTTTTCCAACACATTAGGTGTAAACTACTTAAGATAAATAGCATACATTTACACTGTGTTAATAGATGCTGTCAAAATTTTAGGGGGTGATTCAAGCCACTTTATTTGAGATCACACTCAGTGGCCCAGTTTAACTGGATTCTCAATTAAATGTGTTGTCATGCTGTTTCAAAATAAAAGCACATCTGCCAACACTATACTAAAAGAATACCCTGTACATCTGATTCACGTTATATACTAATAAAAAGTGATTTTTTTTGTAGTTATTTTAAGACAGTATTATGTGTGTGTGTGTATATATATATGTATATATATAGAACACTATATATAGTGTTCAAAAAAAAAAATTATATATATATATATATATATTTTTTTTTTTGAACACTTGGGCCCCCTCAAAATGACACTCACACTGACCTTATCTCTTGATGTAAATAAACCAGTTGCTTGTGGAATCTGTGTGTGCTAATATATTGTTTATGTGTGTCTCAGTGTGTTTGAGAGAAACTGTATCGGGTGATGGAAGACCACACGGTGCATCAGACAGAGCACATGACCACTATCGAGGCCCATGCTGTCACTCAGCAGGTTGGGCAGGTGCATGTCGCCACTTACACAGAGCACGGCATGCTGAGCGCTGATGAGGATTCGCCCTCCTCACCTGATGATGATGCTTACGATGACTCCGACATCCTCAACTCAACTGGTACAGATGAGGTCACTGCACATCTGGCTGCTGCAGGGCCTGTTGGCATGGCAGCAGCTGCCGCTGTAGCAACAGGGAAGAAACGTAAACGGCCGCACATCTTTGAATCAAACCCTTCAATCCGTAAAAGACAACAGACTCGCTTGCTCAGGAAGCTGAGAGCAACTCTAGACGAGTACACGACACGGGTTGGCCAGCAGGCTATTGTGTTGTGCATCTCTCCCTCTAAACCGAACCCGGTGTTTAGAGTATTTGGAGCGGCACCCTTAGAGAATGTGGTGAGGAAATACAAAAGCATGATTCTGGAGGATCTGGAGAACGCTCTAGCTGAACATGCGCCCCCTGGTGGCGGGGAGCTCAGTTCTGAACTTCCTCCACTGACTATTGACGGCATACCAGTGTCTGTGGACAAGATGACGCAGGACAGACACACCTTGCTTGGTTTGTGGCAGTTGGAGGCAGGTCTGTGCAGGGATCATCAGGCCCAGCTCCGAGCGTTTATTCCAGAAATGCTAAAGTATTCCACAGGCCGTGGGAAGCCTGGCTGGGGGAAAGAGAGCTGCAAGCCCATCTGGTGGCCGGAGGACATTCCTTGGGCCAACGTACGCAGTGACGTCCGAACAGAGGAGCAGAAACAGAGGGTGTCATGGACGCAAGCCCTGAGGACTATCGTTAAAAACTGCTATAAGCAGCATGGGAGAGAGGACCTGCTCTACGCCTTTGAGGACCAGGTCACCACACAGCAAGTTGCCACAACAGCCACACACAGCATTGCGCACCTTGTGCCGTCACAGACCGTAGTGCAGACGATCAGTAATCCTGATGGAACCGTCTCGCTCATACAGGTTGGCACTGGAGCCACGGTAGCAACACTGGCAGATGCGTCAGAATTGCCAGGCACGGTGACAGTCGCCCAGGTGAATTACTCCACAGTGACGGATGGAGAGGTGGAGCAGAATTGGGCCACACTACAGGGAGGCGAGATGACCATCCAGACCACGCAAGCGTCAGAGGCCACGCAGGCTGTGGCTTCCTTAGCCGAAGCTGCTGTTGCTGCATCACAAGAGATGCAACAGGGGGCAACTGTTACCATGGCACTCAACAGGTACTCATGGGAAGTAGAGGTAGCAGAAGCAGCAGCCCAGAAATACAGCACAGCGGGAACAATTGGTTCATACTCCATTCCCACAACAATTAGGCTGAGGAGGCATTGTTTTCTGCTCAGCAGTCTTCATTAAAGAAGTAAATTCACCATCAATCTGCTTAGCACAGACAGGACATATACAAACGGGAGCTAAAAAGTTTTCTTTTCATCTACTAAAGCCCCACAGCACTGTAAATAGCCTTCTTTTTTGTCATGATCTCAAAGGGAATCGGGATAGACAGTCTTTGGACTCTTATTTGGTTTGGAAGCCCATTTCTGCCATATAAGAAAAAAAATCATGCTTTGTTTGAATTTGAATTATAACATAAAAACTAATAGGTATGATACAAGTGGAAATGATCATGTACTAAGTCATAATTATGAGATAAAAAGTCAATTATGAGATTAAAAAGTAAGTTGACATCATAATTCTGGATGCTTTATCGATTTACTTTATCTCCGTGTGTCATTTTCGAATATTAATCTCAATTATGACTCTGAAAGTTGAAATTATGACATAGTATGTCGTAATTGACTTGTCAATTTCATCTTTTCATGTAATTTTCTAATGTTATAATTGACTATTTTTGATTTTTTGACTTTTTATATAATTTCTACTTTTATCTCAAATTATGACACAAGTTAGATAAAAAGTTTTAAGAACATGTGGCGACATTTTGTCCTAATTTGTCATAATTATGACTTGGTTTTATGTAAAAATGTCAAATTCAATATAATGAAATAACGAAAA

Function

GO:      GO:0001077, GO:0003674, GO:0060041, GO:0003677, GO:0032496, GO:0001666, GO:0007275, GO:0007005, GO:0005737, GO:0032355, GO:0070062, GO:0005634, GO:0005654, GO:0070417, GO:0006366, GO:0003407, GO:0042803, GO:0005667, GO:0031100, GO:0014823, GO:0051593, GO:0001046, GO:0001895, GO:0006091, GO:0051602, GO:0003700, GO:0006355, GO:0006357, GO:0045944, GO:0006351, GO:0005515, GO:0000978, GO:0045494

KEGG:

id description
K11831 NRF1; nuclear respiratory factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128046 lncRNA upstream 1445 3262462 ~ 3262672 (+) True G112699
TU128003 lncRNA upstream 54405 3209440 ~ 3209712 (+) True G112659
TU127991 lncRNA upstream 65279 3194177 ~ 3198838 (+) True G112653
TU126458 lncRNA upstream 196307 3029927 ~ 3067810 (+) True G111287
TU126459 lncRNA upstream 249225 3003380 ~ 3014892 (+) True G111288
TU128049 lncRNA downstream 12632 3284701 ~ 3284907 (+) True G112702
TU128034 lncRNA downstream 31736 3303805 ~ 3304620 (+) True G112687
TU128063 lncRNA downstream 50754 3322823 ~ 3325360 (+) True G112716
TU128028 lncRNA downstream 65500 3337569 ~ 3338192 (+) True G112681
TU128134 lncRNA downstream 211959 3484028 ~ 3484228 (+) True G112779
CI01000020_03189213_03235363.mRNA mRNA upstream 28685 3188105 ~ 3235432 (+) False CI01000020_03189213_03235363
CI01000020_02983105_03176041.mRNA mRNA upstream 88076 2983105 ~ 3176041 (+) True CI01000020_02983105_03176041
CI01000020_02865197_02919405.mRNA mRNA upstream 344712 2865197 ~ 2919405 (+) True CI01000020_02865197_02919405
CI01000020_02633932_02637797.mRNA mRNA upstream 626111 2633932 ~ 2638006 (+) True CI01000020_02633932_02637797
CI01000020_02627995_02631513.mRNA mRNA upstream 632247 2627995 ~ 2631870 (+) True CI01000020_02627995_02631513
CI01000020_03343617_03348546.mRNA mRNA downstream 71548 3343617 ~ 3348555 (+) True CI01000020_03343617_03348546
CI01000020_03379393_03391963.mRNA mRNA downstream 107324 3379393 ~ 3393102 (+) True CI01000020_03379393_03391963
CI01000020_03397866_03404516.mRNA mRNA downstream 125797 3397866 ~ 3404710 (+) True CI01000020_03397866_03404516
CI01000020_03405045_03408250.mRNA mRNA downstream 132976 3405045 ~ 3408273 (+) True CI01000020_03405045_03408250
CI01000020_03623678_03625344.mRNA mRNA downstream 351465 3623534 ~ 3626024 (+) True CI01000020_03623678_03625344
TU126334 other upstream 605204 2647511 ~ 2658913 (+) True G111183
TU126324 other upstream 814310 2445064 ~ 2449807 (+) True G111173
TU126322 other upstream 818561 2445064 ~ 2445556 (+) False G111173
TU126005 other upstream 1885768 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU125806 other upstream 2177344 1068056 ~ 1086773 (+) True G110720
TU128026 other downstream 29102 3301171 ~ 3303730 (+) True G112679
TU128103 other downstream 442312 3714381 ~ 3733586 (+) True G112753
TU128448 other downstream 1154589 4426658 ~ 4439762 (+) True G113050
TU128442 other downstream 1487943 4785073 ~ 4793261 (+) True G113044
TU128430 other downstream 1534958 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00055570 True 3013 mRNA 0.46 11 NC_007115.7 15081385 ~ 15103696 (-)
bowfin (Amia calva) AMCG00006541 True 1956 mRNA 0.63 11 CM030134.1 8065076 ~ 8087619 (-)