RNA id: CI01000020_03272487_03278811.mRNA



Basic Information


Item Value
RNA id CI01000020_03272487_03278811.mRNA
length 989
RNA type mRNA
GC content 0.42
exon number 5
gene id CI01000020_03272487_03278811
representative True

Chromosome Information


Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3272443 ~ 3279198 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGAGCGGTTATGGGTTGAAGAGGTGATAAACAGTAACAAAACAACCACACAAATTTGCATTGTAGAAACAATACAACAAGAGCTTGAGAGATAAAGAAAGGGATATGAATTTATGGTTCTTTCACTTTGCAATATATGCAGCAACATTAGAATTCAAAATATGTCCTGTATCATATCTTAAACTCTTTCAATGTGTGATTTTTTTTTTTTTTTTTTGTGTTAATCTAAAGATATGAGTGCACTTCTAACCAAAAACATTAAAGAAAAATAAATAAAAAATAAATAAAACATTTCCCCCAGCAGTTTCATAAGATCAGTTTCCAAAATGTTAATATACCATGAATATGTAGAGTCTGTTCATTATCTGAAGTATAAAAGTTGAATGATATGGAGTGCTACATCTTCAGCCTTGTCATTGGTAAACCCCTCTCTCTTTCTCAATCCACCTCCGTTTCCACGCCCAGCTGTGAGCGGAGCAGCCTGGATTACTGCTGCAATCACATGGGGCAGGAGGTGGGCAATCTGTCCGGGTCGCAAGCTCATACGGGCAAAGTGGAAGTGTCTGTTGACTACGCTCTCCCAAACCTCCCCGTGCTGAAGCGTAAATTAGGTTTAATTGCGCAGCTTAAAGGTGAGGGCCTCGTTTTGGGCAGAGGCGGCTCTCTGGGACTCAGTGCTGGTTCAGATGAACAGTCAACATGTTTGGTTACACTGGGCTTCCCGGTGCTGACAGCTGGCTCTGTGATTAGACTATGCACTGATAATGGAGAGGATCAAAGCCCTTTAAGAGGGTTCCTCAGGGGGTTAGGGGGGAGCTTCTCTTTGGTCAATGGGGGCAATGGGGTAAGCCAGGACACTAGGTACGATAGGTCACTGGGAAATGGCCAGCAATTACTAAGCACTGTATGTCGGGAGAAGAAAGTTGCAAATGGAGATCAGGCTTGATATGAAGCTTATTCCAGTAAAATAATGTGTAAGGCTATAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU128574 lncRNA downstream 46891 3225240 ~ 3225552 (-) True G113174
TU128562 lncRNA downstream 67438 3204773 ~ 3205005 (-) True G113162
TU128538 lncRNA downstream 69154 3202959 ~ 3203289 (-) True G113139
TU128537 lncRNA downstream 71803 3200289 ~ 3200640 (-) True G113138
TU127983 lncRNA downstream 91992 3180139 ~ 3180451 (-) True G112645
TU128542 lncRNA upstream 21714 3300912 ~ 3304770 (-) False CI01000020_03304491_03309596
TU128560 lncRNA upstream 112631 3391829 ~ 3445455 (-) True G113160
TU128635 lncRNA upstream 173422 3452620 ~ 3452938 (-) True G113231
TU128664 lncRNA upstream 193349 3472547 ~ 3472806 (-) True G113249
TU128669 lncRNA upstream 200147 3479345 ~ 3479635 (-) True G113254
CI01000020_02924213_02955174.mRNA mRNA downstream 317228 2923453 ~ 2955215 (-) True CI01000020_02924213_02955174
CI01000020_02828968_02849511.mRNA mRNA downstream 422932 2828763 ~ 2849511 (-) False CI01000020_02828968_02849511
CI01000020_02756005_02810495.mRNA mRNA downstream 461745 2755777 ~ 2810698 (-) True CI01000020_02756005_02810495
CI01000020_02732766_02753514.mRNA mRNA downstream 518929 2732696 ~ 2753514 (-) True CI01000020_02732766_02753514
CI01000020_02673393_02705226.mRNA mRNA downstream 566501 2673393 ~ 2705942 (-) True CI01000020_02673393_02705226
CI01000020_03282336_03296954.mRNA mRNA upstream 3078 3282276 ~ 3297250 (-) True CI01000020_03282336_03296954
CI01000020_03304491_03309596.mRNA mRNA upstream 25221 3304419 ~ 3310248 (-) False CI01000020_03304491_03309596
CI01000020_03335308_03338805.mRNA mRNA upstream 55774 3334972 ~ 3339019 (-) True CI01000020_03335308_03338805
CI01000020_03350468_03358669.mRNA mRNA upstream 71255 3350453 ~ 3358669 (-) True CI01000020_03350468_03358669
CI01000020_03362565_03367403.mRNA mRNA upstream 83178 3362376 ~ 3367559 (-) True CI01000020_03362565_03367403
TU127776 other downstream 422925 2844300 ~ 2849518 (-) True CI01000020_02828968_02849511
TU127512 other downstream 1150069 2121748 ~ 2122374 (-) True CI01000020_02121873_02122329
TU127420 other downstream 1151211 2118363 ~ 2121232 (-) False G112136
TU127090 other downstream 1787465 1484581 ~ 1484978 (-) True G111853
TU127088 other downstream 1791385 1480144 ~ 1481058 (-) False CI01000020_01463785_01480876
TU128540 other upstream 25702 3334303 ~ 3334562 (-) True G113141
TU128800 other upstream 482247 3761445 ~ 3847924 (-) True G113375
TU129277 other upstream 1465321 4744519 ~ 4746050 (-) True G113802
TU130330 other upstream 2245408 5524606 ~ 5525234 (-) True G114747
TU130469 other upstream 2679253 5958451 ~ 5960015 (-) True CI01000020_05958448_05959900

Expression Profile