RNA id: CI01000020_03623678_03625344.mRNA



Basic Information


Item Value
RNA id CI01000020_03623678_03625344.mRNA
length 1304
RNA type mRNA
GC content 0.39
exon number 3
gene id CI01000020_03623678_03625344
representative True

Chromosome Information


Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3623534 ~ 3626024 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTTTAAAGGCCGTGGCTTCCAATTCCAGACTCTCTTCAGTGTCTGGCCTTAAATAGGGTTAGGCCAAGCGTAATTATGTTCCAGACTGGACCAATGAACCCCCCAAAAGTCTCTAAGGAACATCACACTTAGTTGTACCATTCATGCCCACAGAATCCAGGTCAGTTAATGTGCAGAGCAGAGGGCTGGCCTTCTTGGAAGCCTCTGTTCAGTTGCCTGAGGCTTTTCCTCCAGCTAGAGTTATTCAAGCATCTAGTACACAGACCATGGGATACTCTAAGACACTGTGGATCAGTAGAAGAGCTAGTTTTTATGGTGGATTTATTCTGCATTTGCTTTGTTCTGTTTGTCAACTAAACAAAAAAGCAGATAAGGGTGTTCTCTGCAAATATCGAAAATTTATAGAGCTTCAGAGCAAACAGAGAGAGTTCTGCATGTTCTTTTTAAATGATCATTATGATGAAGATGGAAGAGAACATAGTTTGTGGGAAAAGGGTGCCGAGCCCTTCTGCTGCCTATTGGCCATCTGTGTGTTTCTAGAGCATATGGCCTTACGCAGTAGACATTTCTGGAAAGTCATGCAGAGATTGGTGAAACGACAGAATGATTTTGTGAAACGTTAAGAGTTCAATGTGAAATCCATTACAGACGTGCTATTTTAGTTCATCTGGCTGTTCTGAATGTTTACTTTGAAAACGAAAAGGTCAGAGTTTGTATAACTTAATGTCACATTTTTTTCCCAGATTGAGTTGTTTCTTTTCTTTCTTGACTTTGTACTGGCAGCCCATTTCATATTTAAAACTGAACAGCCCTCAAAAATGACAGCAATGTTCTCATGGCCACCCTAACTTGTTTACATACTAAACTCAAACATAGATCAGATTTTCCAAGCGAAATTACTGGGTCAAGGGTCTCAAGGGCTGGAATGTATTACAATTTTTCATCCGTAGGCCTTTTTTGATGTTCAAAATCAGTTTAGTGAGCCAAGTAAACTGTCTAGTCAGAGTTTTGATCTAAAACTGATCTGCAAACAGCATTTCAGAGTTTGTTGGCCTGAGGGAGGTTCATACAGCAATGTTAGCATATGATATTATTTGATGCCTCTGGAAATATGACATTGTTGATCACATTTCTAAACAACAGTTCTATTCACTAAAATATGAATGCCTACAGGAATATGTTGCTGTTAGGAATTATTTTAAGCACAAAGTAGAAATGTTCAAATTAATGCTAACAGGCTGCTTTTTTTGTAGAAATTACTAATTGATAAGCCCTAAAACATGTCCGTTCTGTTAATGTACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU128123 lncRNA upstream 67585 3555249 ~ 3555949 (+) True G112768
TU128121 lncRNA upstream 107029 3516132 ~ 3516505 (+) True G112766
TU128145 lncRNA upstream 124310 3498805 ~ 3499224 (+) True G112790
TU128144 lncRNA upstream 126202 3497075 ~ 3497332 (+) True G112789
TU128143 lncRNA upstream 127143 3496182 ~ 3496391 (+) True G112788
TU128115 lncRNA downstream 63432 3689456 ~ 3696142 (+) True G112760
TU128124 lncRNA downstream 70561 3696585 ~ 3697508 (+) True G112769
TU128161 lncRNA downstream 87208 3713232 ~ 3713845 (+) True G112806
TU128175 lncRNA downstream 120358 3746382 ~ 3746615 (+) True G112819
TU128183 lncRNA downstream 131837 3757861 ~ 3758199 (+) True G112827
CI01000020_03405045_03408250.mRNA mRNA upstream 215261 3405045 ~ 3408273 (+) True CI01000020_03405045_03408250
CI01000020_03397866_03404516.mRNA mRNA upstream 218824 3397866 ~ 3404710 (+) True CI01000020_03397866_03404516
CI01000020_03379393_03391963.mRNA mRNA upstream 230432 3379393 ~ 3393102 (+) True CI01000020_03379393_03391963
CI01000020_03343617_03348546.mRNA mRNA upstream 274979 3343617 ~ 3348555 (+) True CI01000020_03343617_03348546
CI01000020_03264878_03271412.mRNA mRNA upstream 351465 3264117 ~ 3272069 (+) True CI01000020_03264878_03271412
CI01000020_03632947_03634207.mRNA mRNA downstream 6923 3632947 ~ 3634278 (+) True CI01000020_03632947_03634207
CI01000020_03660304_03682653.mRNA mRNA downstream 34280 3660304 ~ 3683035 (+) True CI01000020_03660304_03682653
CI01000020_03761716_03806609.mRNA mRNA downstream 135692 3761716 ~ 3806914 (+) True CI01000020_03761716_03806609
CI01000020_03840431_03846507.mRNA mRNA downstream 213578 3839602 ~ 3847229 (+) True CI01000020_03840431_03846507
CI01000020_03848839_03853256.mRNA mRNA downstream 222815 3848839 ~ 3853630 (+) True CI01000020_03848839_03853256
TU128026 other upstream 319804 3301171 ~ 3303730 (+) True G112679
TU126334 other upstream 964621 2647511 ~ 2658913 (+) True G111183
TU126324 other upstream 1173727 2445064 ~ 2449807 (+) True G111173
TU126322 other upstream 1177978 2445064 ~ 2445556 (+) False G111173
TU126005 other upstream 2245185 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU128103 other downstream 88357 3714381 ~ 3733586 (+) True G112753
TU128448 other downstream 800634 4426658 ~ 4439762 (+) True G113050
TU128442 other downstream 1133988 4785073 ~ 4793261 (+) True G113044
TU128430 other downstream 1181003 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453
TU128431 other downstream 1181003 4823772 ~ 4823786 (+) True G113036

Expression Profile