RNA id: CI01000020_03761716_03806609.mRNA



Basic Information


Item Value
RNA id CI01000020_03761716_03806609.mRNA
length 2648
RNA type mRNA
GC content 0.49
exon number 18
gene id CI01000020_03761716_03806609
representative True

Chromosome Information


Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3761716 ~ 3806914 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGGATTATTCAAACTTTATTTTGCGCTTTGCGCTGTCGGACTTTTCTATGGTTTCGGAGTTGATCCAGCATTACATGTGGACGTCTTCCAGGAGTTTGATCTTGTGAGGTCAAGTGCTGGAGTCTCCCAGGTACAGGGGTTCCACAATGAGAGCAGAGCATATCTGTTTGAAGGTGGCACCTCCACAGTATTGATTGGCGCTCCAGTAAATGCCAGTGGGATTGCGGAATTGGGATCTAACAGACAGGCTCCGAGACAAGGCTCATCAAGGAATGCAAGAGCTTCCCTCAAGGCAGCAGAGAGAATTCTTCAGAAGTTGAGAGGAAAAACAGAGTTCACTCTTCTAATGACCCTCAAACAGGAGAAATTCAGCTCAGGAGTGCTGCTGTCCATCCACTATGGAGAACAGAGGTTTCTGGAGGTAGAGAGCAGCGGTCTGCGTAATGAGATCCGTCTCTTCTTCCAAACCTCAGACCAGCGGCAGCAGAAAGAGGTCTTCCCCTATAGTCTGGCAGATGGACACTGGCACAAAGTCTCCCTGGCATTCAGTGCCACCCAAGTGGTGCTCCATATTGACTGCAACAGAATTTATGAAAGGATTGTGGAGGCACCATCTATGGACTTTCCCAGAGGAACAAACATCTGGCTTGGTCAAAGAAATGACGCCCATGGTTTCTTCAGGTTGGCACTTGCCGAAGAGAAGATGAAGTACTTGGATGGCTGTTACTGTGAGAGGACGTGCACCCTGAATGGAGAGATATACAGGGACGATGATGCTTGGATAGATGGATGCAGAAACTGCACATGCTCAAACGGTACAGTGGAGTGTGAGAGTATTTTCTGCCCACCACCTCAGTGCCCCCCTGATACAGCTCCAATCTACATGCCTGGAGCATGCTGTAAAGAGTGCCAGCCCGTGTGTCTGTTCAGAGGAAGAGTGTACGTGGAAGGTGATCGCAAGAGCGTACACGACTCTGAGGGAAACTGTCTGCTGTTTGAATGCAGGGATCGAAGTATGCATAGGGTTGAAATGACTCCTTGTCCAGAACTAAACTGCCCAGAGTCAGAGCAGATCACACTCACAGACCGCTGCTGCAAAGTGTGCAGAGGGCATGATTTCTGTGCTGAGGGTCACAACCGCAATTGTGTGGAGAATTCGGACTGCATTAATCTAGAGGCAGGAGCTTGCTGCAGCTGTAAAGAGGGATACCATGCGCTCAGGGACGACAGTGCCTACTGCCAAGATATCGATGAGTGTGCAGAGGGGAAACACTACTGCAGGGAGAACACAATGTGTATGAACACACCTGGCTCCTTCATGTGTGTCTGTCACACCGGTTACGTCCGTATTGATGATTACTCCTGCACAGAGCATGATGAGTGTGTGCGTGGACTGAATACTTGTGACGAAAACGCTCTTTGCTTCAATACGGTTGGCGGACACAGTTGTTCCTGTAAACCAGGGTACGTCGGTAACGGGACTGTCTGCAGAGCACTTTGTGAGGGCCAGTGTCTCAACGGAGGTTCTTGCGTCAATCCAGATACCTGCATCTGCCAGCAAGGCTTCACTGGAAAGAGATGTGAGACAGACATCGACGAGTGCTCAGATGGATTTGTGGAGTGTGACAGTCGAGCCACTTGCGTCAACCTACCTGGCTGGTACCACTGCGAGTGTCGTGATGGATACCATGACAACGGAATGTTCTCAGCCAATGGAGAGTCATGTGAAGACATTGATGAATGTGAGACGGGGAGGCACAGCTGTGCTAATGACACCGTGTGCTTTAATGTGGACGGAGGTTACGACTGCCGCTGTCCGCACGGTAGGAACTGCACGGGAGACTGCGCCCACGACGGGAAGGTGAAACACAACGGGCAGATCTGGGTGCTGGATGACGACAGGTGCTCGGTCTGCTCTTGTCAGTCGGGGTTGGTGATGTGCAGACGGATGGTGTGTGATTGTGAGAATCCCACCGTGGATGTGTTGTGCTGTCCTGAATGCGATCCTCGTCTGAGTTCTCAGTGTTTGCATCAGAACGGTCTGCTTGCATACAGTAATGGAGAGACCTGGGTGGAGAACTGCCAGCAGTGCCAGTGTATGATTCAGATCTATTACAGAGAAACTGCAGAGAAACTGCTGGTCACAGTGGAACTTTCTGCAATATCTCAGTCAGGAAGTCTTGCACCAAATGTCGAACAATGTAGTTTTCAGCCCCTCTGGTGTTTGTCCCTCCTGCAATTTTTCTTTCTTTATACAGAACTTTTTGCACTCTGCGAAGAATTGATGGAGTCCAGCTCCATCTTTCTCTCTAGTGAAAATCCTTGCTACAGTATTTGCTGAACTGACAATGGGCTCAAACAGAGCTCCTAAACTTGTCAGAGGTTTTCGTGACATGCCAGGCTCCCAGTTCACATTTTCTCTGTCTGAGAAGGTTTTTAGTACACAGAGAATGAAGCTTTTCCCTCAGGATTTAGGACTGCTAAACTTGTAGGTCTGTAATGAATTCTGTTAAAGACTTCTGGACAGTTGTGGACTGCATAACAGACGGAAGGCTAATGCTAAAGCCAGGCTCTGGATTAATTGCTCAATAACTGACTTTCAATTGAAAACCCTTTTTAATCCTACACAAGTGTAATCTGTGTCCA

Function


GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU128183 lncRNA upstream 3517 3757861 ~ 3758199 (+) True G112827
TU128175 lncRNA upstream 15101 3746382 ~ 3746615 (+) True G112819
TU128161 lncRNA upstream 47871 3713232 ~ 3713845 (+) True G112806
TU128124 lncRNA upstream 64208 3696585 ~ 3697508 (+) True G112769
TU128115 lncRNA upstream 65574 3689456 ~ 3696142 (+) True G112760
TU128206 lncRNA downstream 50844 3857758 ~ 3858264 (+) True G112848
TU128221 lncRNA downstream 168957 3975871 ~ 3985375 (+) True G112861
TU128259 lncRNA downstream 186107 3993021 ~ 4051603 (+) True G112897
TU128273 lncRNA downstream 252987 4059901 ~ 4060168 (+) True G112911
TU128281 lncRNA downstream 265508 4072422 ~ 4072638 (+) True G112919
CI01000020_03660304_03682653.mRNA mRNA upstream 78681 3660304 ~ 3683035 (+) True CI01000020_03660304_03682653
CI01000020_03632947_03634207.mRNA mRNA upstream 127438 3632947 ~ 3634278 (+) True CI01000020_03632947_03634207
CI01000020_03623678_03625344.mRNA mRNA upstream 135692 3623534 ~ 3626024 (+) True CI01000020_03623678_03625344
CI01000020_03405045_03408250.mRNA mRNA upstream 353443 3405045 ~ 3408273 (+) True CI01000020_03405045_03408250
CI01000020_03397866_03404516.mRNA mRNA upstream 357006 3397866 ~ 3404710 (+) True CI01000020_03397866_03404516
CI01000020_03840431_03846507.mRNA mRNA downstream 32688 3839602 ~ 3847229 (+) True CI01000020_03840431_03846507
CI01000020_03848839_03853256.mRNA mRNA downstream 41925 3848839 ~ 3853630 (+) True CI01000020_03848839_03853256
CI01000020_03957225_03966342.mRNA mRNA downstream 150311 3957225 ~ 3966942 (+) True CI01000020_03957225_03966342
CI01000020_03985890_03988606.mRNA mRNA downstream 178976 3985890 ~ 3988936 (+) True CI01000020_03985890_03988606
CI01000020_03989813_04001907.mRNA mRNA downstream 182899 3989813 ~ 4002822 (+) True CI01000020_03989813_04001907
TU128103 other upstream 28130 3714381 ~ 3733586 (+) True G112753
TU128026 other upstream 457986 3301171 ~ 3303730 (+) True G112679
TU126334 other upstream 1102803 2647511 ~ 2658913 (+) True G111183
TU126324 other upstream 1311909 2445064 ~ 2449807 (+) True G111173
TU126322 other upstream 1316160 2445064 ~ 2445556 (+) False G111173
TU128448 other downstream 619744 4426658 ~ 4439762 (+) True G113050
TU128442 other downstream 953098 4785073 ~ 4793261 (+) True G113044
TU128430 other downstream 1000113 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453
TU128431 other downstream 1000113 4823772 ~ 4823786 (+) True G113036
TU128432 other downstream 1000113 4807027 ~ 4809414 (+) False CI01000020_04807118_04808453

Expression Profile


CI01000020_03761716_03806609.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
End of interactive chart.

CI01000020_03761716_03806609.mRNA Expression in each Bioproject

Bar chart with 28 bars.
CI01000020_03761716_03806609.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
End of interactive chart.