RNA id: CI01000020_04819543_04826613.mRNA



Basic Information


Item Value
RNA id CI01000020_04819543_04826613.mRNA
length 2764
RNA type mRNA
GC content 0.45
exon number 12
gene id CI01000020_04819543_04826613
representative True

Chromosome Information


Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 4819543 ~ 4826782 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGTCATTTATCATGGCCGGTAATAAGACGCGCCGGGTCGAGGGCCGTTTCCACCTTTGTGATCCCTGGTGGAAGCTATCCCTCCTACAGCCTCCGCACCGATCTGAGTTCAGAGGACCAGTCACTGGTGTTTCTTTTTCTTAAAGAGTGTGGGGCAGAGCCTGTATTTGTTACTGAGTTCAAGAATTGGTTGCCCAGTGACAGAAATGTGGAGCTTGTCGATGTGCTGGACGTCCTGCAGGAGTTTGAAGATTCGTCACCTAAGAATAAAGCTGTCGCTGAACAGCTCAAGTCAAGTGTCAAAAACTCAGTCGCTTGGATGCACGTGACCGTTGCCAGCATGTACCCTCAGATCATGAAATACTTGCCAACATTGCTGCCAGGCCAGTTTATGGATATAATAAGCAACGGAAAGATGAAAAACACAGAGGAAAACACTGAAGAAACTCCACAGCAGCAGATTAACACAAGGTTATTGGCTAATCTGGAGGAGTTAATCAAGACTGATGTTTGGAAGTTGGGCTTCAACTATATCATGTTTAAAGAGTTCCACATGATCAGATGTGAAGCAAAACTAGAGGCCTTCAAGTGCTTCAAGTACTTGTTTAGAAGAATCCCTGAGGTACAGCAAAATGCCTTACTATTGTATGCAGAACTGAAAGAATACTGCAGAAAGACTGGCAGCACGTACATTGAACATAAGATGCTGCTGGAGAAGTGGAAAAATACATTTGAGGGGGCCATGTTCCTTCAGGAGCAGGGGGTGCTGGTGAAGAAGAACAACAAGGTGTCACTTCACAACCACTTCACCTACGAAAAAGGCATTGCAGAATGCTTGAGGGTCCTGGTTGAGGGAGAACCCTGGAAAATCCACTTGGATGTGAGAAAGGTTCTTCGAAGAGCTGCGATGGAGAGATTATGGGGGAAGGCTTGTGATGCAAGAACATCGGCCTCTGAAAAAAAGGACTTGCAGCAAGAAGAAGATGAAGCTCAGCCTGGTTCCTCAAGCATGGACCACAATGGAACATATTCTGACTCAAATGACCCCACCTATTCAGACATTGATTCCTCTACTATAGAGTTGGACCACGATCAGGTGCAAGCAGCAGAAATGATGTGCGACAACCCAGTGACAGTGATCAGTGGGAAGGGTGGTTGTGGGAAAACCACAGTAGTCAGCCTGGTGTTTAAGGCGGCCATGCAGAAACAGACCAGCAACAGAGACATTGAAGACAAGCCTCCTGTGGAGGTTCTCCTCACTGCTCCTACAGGGAGAGCTTCTTCACTTCTTACTAAAAGAACCGGTTTCACTGCTTATACTATGCACCAGATTTTGTGGAGTTTCAAAAAAGCAAAAACAGATCCCAGTGGACATCCTCAGGATTGGAAGTTCTCCCAGGTGCGGGTGCTGGTTGTCGATGAAGGGAGCCTGGTGTCTGTTCAGATCCTTCACTCCGTTCTCAGCATGCTTACCAAACATGCAAAACTCCAGAAGTTCATCATTTTGGGAGATGTGAGGCAGCTGCCCAGCATTGAGCCTGGAAACACATTGTACGATCTGTTTGAAGGCCTCAAGGATGTCCGTTGGGCCATTGAGATGAAGACCAACCATCGTGCCGAGTCTGAGCTCATCGTCAGAAACGCTGGACTCATCTCAGAGATGGGTAAGAAAAGGCGTTACAGCCCTCTGGAGTTTGATGCCACCATAAATATGACAAATCCCTCCACAGTGCCATCTGACAGAAGGTTCATTTTTGTCAAAATCAGTGATAAAAAGGATGCTCTCCAGGAAGCCATTCAGTTCTTACTCATTGACGCTCCTGGGCTCGAAGACCATAAATCATCACAGATTGTGGCATTTATGAGGAAGGACTGCCAGTTGATCAATGAGCTTTGCTGCAACCATTATTCGGACCATGATATGAAGACTTGCGAAAATAAAATGTGCTTTCAAGTGGGAGATAAAGTTTGCTGTGCAAAGAATGGCTACATCTCTGGCAAAGATGAAGAGAAAAAGCTAGAAGATCCTGCCCGTGTTACTGCTGGAACTTCCTGTTTAAATGGTGGAGCTTTCCAAGATATTCCTAGAAGCCAAAGAAAAAATGAACAGATGACAGTGAAAAAAGAAAGAATGTGCAATGGTGAAATTTTCTTCATTAAAAAGGATGTGACTGAGATAGATGCAAGAAGCAAAACAACACGCTACCTGACACTAGATGATGAAAACGGGCATGTGGTAACTTCTAACTACAGCGAGCTACAGCGAGAATGTAAATTGCGTCATGCTTGGGCAAGAACCATTCACACCTTTCAGGGCTCAGAGGCTGAAACTATTGTGTACGTTCTCAGAAATAGCTTTGCTGAAAACTGGCAGCATGTATACACTGCAGTGACACGCGGTCAGAAGCGTGTGTATGTGGTGGGTACAAAGCGTGACCTAGAAGGAGCCATCAAGAAAAGGATCCCCCCTCGAAACACACGATTGTGTGGCCTTCTCAAGGCGATAGTTGCCCAACAAGGTCCTGAAGCCTCAAAGCGGCATGCTGAATCAGACCCATGCACTACACCGAGCAAACTTGTAAAAGAAACAGAGTAAAAAATCTGTAAATTATCAAAAATACATATTGCTTGTAACTTTCTATGGCCTACTCTTTCTACTCTAACAAACCACTTCGGAAGAGTCTGCGCTAGCTCAAGCCCCAAATCTCACAGCAAGGAGCTTCCCTGAGAAAATTCATTTTCATATCTCAACTTGATTTACTCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU128486 lncRNA upstream 13490 4805833 ~ 4806053 (+) True G113088
TU128455 lncRNA upstream 117819 4693855 ~ 4701724 (+) True G113057
TU128467 lncRNA upstream 138871 4680289 ~ 4680672 (+) True G113069
TU128458 lncRNA upstream 228430 4585068 ~ 4591113 (+) True G113060
TU128446 lncRNA upstream 404338 4409512 ~ 4415205 (+) True G113048
TU128497 lncRNA downstream 75310 4902092 ~ 4902684 (+) True G113098
TU128498 lncRNA downstream 76048 4902830 ~ 4903283 (+) True G113099
TU128501 lncRNA downstream 87239 4914021 ~ 4914271 (+) True G113102
TU128456 lncRNA downstream 113629 4940411 ~ 4943891 (+) True G113058
TU129453 lncRNA downstream 229548 5056330 ~ 5056639 (+) True CI01000020_05038237_05069897
CI01000020_04818050_04818245.mRNA mRNA upstream 1298 4817199 ~ 4818245 (+) True CI01000020_04818050_04818245
CI01000020_04813284_04816943.mRNA mRNA upstream 2440 4813284 ~ 4817103 (+) True CI01000020_04813284_04816943
CI01000020_04807118_04808453.mRNA mRNA upstream 10694 4806765 ~ 4808849 (+) False CI01000020_04807118_04808453
CI01000020_04760482_04774849.mRNA mRNA upstream 43460 4760043 ~ 4776083 (+) False CI01000020_04760482_04774849
CI01000020_04733481_04740265.mRNA mRNA upstream 79278 4733481 ~ 4740265 (+) True CI01000020_04733481_04740265
CI01000020_04827882_04835758.mRNA mRNA downstream 469 4827251 ~ 4836019 (+) True CI01000020_04827882_04835758
CI01000020_04837068_04844947.mRNA mRNA downstream 10286 4837068 ~ 4845982 (+) True CI01000020_04837068_04844947
CI01000020_04868249_04868956.mRNA mRNA downstream 40522 4867304 ~ 4869071 (+) True CI01000020_04868249_04868956
CI01000020_04870746_04871405.mRNA mRNA downstream 43565 4870347 ~ 4871868 (+) True CI01000020_04870746_04871405
CI01000020_04900806_04906259.mRNA mRNA downstream 73375 4900157 ~ 4907594 (+) True CI01000020_04900806_04906259
TU128432 other upstream 10129 4807027 ~ 4809414 (+) False CI01000020_04807118_04808453
TU128434 other upstream 10182 4807027 ~ 4809361 (+) True CI01000020_04807118_04808453
TU128433 other upstream 10569 4807027 ~ 4808974 (+) False CI01000020_04807118_04808453
TU128430 other upstream 10671 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453
TU128442 other upstream 26282 4785073 ~ 4793261 (+) True G113044
TU129409 other downstream 440255 5267037 ~ 5267132 (+) True G113919
TU129420 other downstream 795925 5622707 ~ 5625232 (+) True G113929
TU129586 other downstream 976270 5803052 ~ 5805718 (+) True G114094
TU129648 other downstream 1152979 5979761 ~ 5981248 (+) True CI01000020_05960777_05981596
TU129915 other downstream 1765442 6592224 ~ 6593564 (+) True G114382

Expression Profile