RNA id: TU129453


Basic Information

Item Value
RNA id TU129453
length 310
lncRNA type sense_over
GC content 0.33
exon number 1
gene id CI01000020_05038237_05069897
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 5037139 ~ 5070313 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGAGAGTGCATATCGGTTTAGAGGAAAATGTTTAAATATCCAATTAGCCAATTGGAGTCCAATTAGCAGTTTAAACATACTGAAAATTATTACATTTGCTTCGCATCCAATTAAGTTGACTTGTTTGGAGATTATAACTATCAGTATTATGATTGATAGAGGTCTTTAAAGGGATAGTTCATGCAGAAATGAAAATCCTGTCATTATTTGTTCACCCTCATGTTGTTCCCAACCTGTATGAAGATATGTTCAAATGTTCAAATCAAATATTGTTCTAGACCCCATTGAGTTTCATTGAGTTTCAGATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128456 lncRNA upstream 112439 4940411 ~ 4943891 (+) True G113058
TU128501 lncRNA upstream 142059 4914021 ~ 4914271 (+) True G113102
TU128498 lncRNA upstream 153047 4902830 ~ 4903283 (+) True G113099
TU128497 lncRNA upstream 153646 4902092 ~ 4902684 (+) True G113098
TU128486 lncRNA upstream 250277 4805833 ~ 4806053 (+) True G113088
TU129461 lncRNA downstream 41503 5098142 ~ 5098363 (+) True G113970
TU129466 lncRNA downstream 122672 5179311 ~ 5200382 (+) True G113975
TU129446 lncRNA downstream 238342 5294981 ~ 5299565 (+) True G113955
TU129445 lncRNA downstream 436982 5493621 ~ 5493674 (+) True G113954
TU129444 lncRNA downstream 447325 5503964 ~ 5506516 (+) True G113953
CI01000020_05023157_05024184.mRNA mRNA upstream 32037 5023157 ~ 5024293 (+) True CI01000020_05023157_05024184
CI01000020_04926506_04934038.mRNA mRNA upstream 122088 4925555 ~ 4934242 (+) True CI01000020_04926506_04934038
CI01000020_04900806_04906259.mRNA mRNA upstream 148736 4900157 ~ 4907594 (+) True CI01000020_04900806_04906259
CI01000020_04870746_04871405.mRNA mRNA upstream 184462 4870347 ~ 4871868 (+) True CI01000020_04870746_04871405
CI01000020_04868249_04868956.mRNA mRNA upstream 187259 4867304 ~ 4869071 (+) True CI01000020_04868249_04868956
CI01000020_05091059_05093805.mRNA mRNA downstream 34420 5091059 ~ 5094794 (+) True CI01000020_05091059_05093805
CI01000020_05108357_05112394.mRNA mRNA downstream 51640 5108279 ~ 5112552 (+) True CI01000020_05108357_05112394
CI01000020_05132989_05135436.mRNA mRNA downstream 75838 5132477 ~ 5135458 (+) True CI01000020_05132989_05135436
CI01000020_05143320_05161129.mRNA mRNA downstream 86534 5143173 ~ 5162759 (+) True CI01000020_05143320_05161129
CI01000020_05267250_05267668.mRNA mRNA downstream 210611 5267250 ~ 5267842 (+) False CI01000020_05267250_05267668
TU128431 other upstream 232544 4823772 ~ 4823786 (+) True G113036
TU128432 other upstream 246916 4807027 ~ 4809414 (+) False CI01000020_04807118_04808453
TU128434 other upstream 246969 4807027 ~ 4809361 (+) True CI01000020_04807118_04808453
TU128433 other upstream 247356 4807027 ~ 4808974 (+) False CI01000020_04807118_04808453
TU128430 other upstream 247458 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453
TU129409 other downstream 210398 5267037 ~ 5267132 (+) True G113919
TU129420 other downstream 566068 5622707 ~ 5625232 (+) True G113929
TU129586 other downstream 746413 5803052 ~ 5805718 (+) True G114094
TU129648 other downstream 923122 5979761 ~ 5981248 (+) True CI01000020_05960777_05981596
TU129915 other downstream 1535585 6592224 ~ 6593564 (+) True G114382

Expression Profile