RNA id: TU129445


Basic Information

Item Value
RNA id TU129445
length 54
lncRNA type sense_over
GC content 0.45
exon number 1
gene id G113954
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 5493621 ~ 5493674 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTCGTAACCTGACCACACTTACTGGTGACATCCTCACCGTTACATACTCAGAGGATACTATATACATCAATAACAAAGCCAAGGTGGTGTTCAGTGATCTGGAAAGTAGTAACGGGATTTTCCTTGAGATTGACACTGTCCTAATGCCCCCCAGTTTCCAGATTCAGAAAGACAGGGAACAAGACGGTACACCGCGTAACCTCTCAGAAGTGGTCAATATCCATGGCTTCAAGACATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129446 lncRNA upstream 194056 5294981 ~ 5299565 (+) True G113955
TU129466 lncRNA upstream 293239 5179311 ~ 5200382 (+) True G113975
TU129461 lncRNA upstream 395258 5098142 ~ 5098363 (+) True G113970
TU129453 lncRNA upstream 436982 5056330 ~ 5056639 (+) True CI01000020_05038237_05069897
TU128456 lncRNA upstream 549730 4940411 ~ 4943891 (+) True G113058
TU129444 lncRNA downstream 9897 5503964 ~ 5506516 (+) True G113953
TU129423 lncRNA downstream 72325 5566392 ~ 5622606 (+) True G113932
TU129432 lncRNA downstream 121236 5615303 ~ 5618949 (+) True G113941
TU129415 lncRNA downstream 131856 5625923 ~ 5627623 (+) True G113924
TU129552 lncRNA downstream 174582 5668649 ~ 5668857 (+) True G114060
CI01000020_05475873_05481460.mRNA mRNA upstream 12161 5475873 ~ 5481460 (+) True CI01000020_05475873_05481460
CI01000020_05341186_05473274.mRNA mRNA upstream 20347 5341186 ~ 5473274 (+) True CI01000020_05341186_05473274
CI01000020_05309535_05312719.mRNA mRNA upstream 180237 5309535 ~ 5313384 (+) True CI01000020_05309535_05312719
CI01000020_05269653_05286461.mRNA mRNA upstream 206247 5269653 ~ 5287374 (+) True CI01000020_05269653_05286461
CI01000020_05267250_05267668.mRNA mRNA upstream 225779 5267250 ~ 5267842 (+) False CI01000020_05267250_05267668
CI01000020_05514885_05515490.mRNA mRNA downstream 20818 5514885 ~ 5515695 (+) True CI01000020_05514885_05515490
CI01000020_05536783_05538245.mRNA mRNA downstream 42716 5536783 ~ 5538386 (+) True CI01000020_05536783_05538245
CI01000020_05569133_05573180.mRNA mRNA downstream 74316 5568383 ~ 5573807 (+) True CI01000020_05569133_05573180
CI01000020_05636849_05648400.mRNA mRNA downstream 141284 5635351 ~ 5648422 (+) True CI01000020_05636849_05648400
CI01000020_05651021_05656758.mRNA mRNA downstream 156712 5650779 ~ 5656904 (+) True CI01000020_05651021_05656758
TU129409 other upstream 224948 5267037 ~ 5267132 (+) True G113919
TU128431 other upstream 669835 4823772 ~ 4823786 (+) True G113036
TU129420 other downstream 128640 5622707 ~ 5625232 (+) True G113929
TU129586 other downstream 308985 5803052 ~ 5805718 (+) True G114094
TU129648 other downstream 485694 5979761 ~ 5981248 (+) True CI01000020_05960777_05981596
TU129915 other downstream 1098157 6592224 ~ 6593564 (+) True G114382
TU129931 other downstream 1104279 6598346 ~ 6600180 (+) True G114389

Expression Profile