RNA id: TU125641


Basic Information

Item Value
RNA id TU125641
length 635
RNA type TUCP
GC content 0.48
exon number 3
gene id G110562
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 30693 ~ 48040 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTATTATGAGATAACATCAGAAAGTGTGCTGATATGAACTGAGCTGCGATGAGGTCAAACACACACACACATGTTTCTGATTTCGACCTGTTTCCTCTGTAAATCATTCATCTGTTTTCTGTCTATTAATCCTCAAGTCTTTCCTCTAAAGAAAGAAAACAACCTCGAATTCATCCACGAATGTGTGAGACGAGATCAAGAGAAACAAATCCAGTCAAGACAGATGTGATCAGATCGATTGATCGATGGATGGATGGACAGAACGATGGATGGATGGATAGATAGACAGGTGTTCCTACCTGTAGGGAGTGTAAGACAGCAGGTGTGTCGTCCGCTCTCAGGAACACTTGCTGTCCACGTAGGTCTCTTCCTCGCTTCCTCTCATGAGCGTTCATGTCATTCCCTCCTGTGTGTCAAAGCTCCGCACAGACCAGCACACACTCACTCGCACACACACACACACACACTCGTGTCGGGTCTCACAGAGGTGTGCGCTCGAGCCCTCAGCAGGGAACACACTGACAGCACACACACACCACAGCCACTCTTCTGTCCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125600 lncRNA downstream 9164 57204 ~ 93449 (+) False G110538
TU125601 lncRNA downstream 9164 57204 ~ 93449 (+) False G110538
TU125604 lncRNA downstream 9164 57204 ~ 93449 (+) False G110538
TU125602 lncRNA downstream 39654 87694 ~ 93449 (+) False G110538
TU125599 lncRNA downstream 42658 90698 ~ 93449 (+) True G110538
CI01000020_00108833_00112799.mRNA mRNA downstream 60793 108833 ~ 113427 (+) True CI01000020_00108833_00112799
CI01000020_00126243_00220377.mRNA mRNA downstream 78203 126243 ~ 221460 (+) True CI01000020_00126243_00220377
CI01000020_00250359_00289375.mRNA mRNA downstream 202319 250359 ~ 289375 (+) True CI01000020_00250359_00289375
CI01000020_00466505_00489442.mRNA mRNA downstream 418236 466276 ~ 489664 (+) True CI01000020_00466505_00489442
CI01000020_00501322_00502978.mRNA mRNA downstream 453150 501190 ~ 503119 (+) True CI01000020_00501322_00502978
TU125672 other downstream 132738 180778 ~ 226848 (+) False G110589
TU125671 other downstream 174091 222131 ~ 226848 (+) True G110589
TU125804 other downstream 762859 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125806 other downstream 1020016 1068056 ~ 1086773 (+) True G110720
TU126005 other downstream 1328329 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288

Expression Profile