RNA id: TU125599


Basic Information

Item Value
RNA id TU125599
length 2686
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G110538
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 57204 ~ 93449 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATTTGTTTTAATTTTTTTCCCCTAGTAATTTTAGTGCTTCAACTTAAACTTACTTCACCAAGTCGCCAAGGATAATAGTTTTAGTTAATGATGATAACCCTGCATCAGAATAATGTCAACGCAGAAACCTTAAAATGTTTTGCTTTATTTTATTTAAAGCAAAATGTAATTTCTTTGATGTTCATGTTTTCTGTTATATTCAGATTTCCATCTCATGTGTGTGTGAGACCATAACATGTCAGTTCAGGGCTTTATGAGCAGCACTTTCAGGAATGATTCAGAGCAGAGAATCAAACGCAGAAACACTGAGAGAAACTCCTGTGAGAGTCTGACAGATTAAACATGTTTGACTGAATCTCATTTAGACTGCTAACCTAACATGGTAACATCTACATTAACTGCTTTTAAGTCAAAAATATTAACATCACTGAATCACCCCAAATACATTCATTTATACCAACAAAACTCATTTTTATGGGTTAAATCAAGGTAGAAAGAGCTCTTTAAGGTAACAATCGCAGGTTACCACTGCTTTCACAGGTTTATTATTAGTAGTAAATTAAAACTAAAACCATTAAAAACATTTTTGTTACTTTAAACAAAACAAATGTTCACTGAAATAAAATGAGATATTAAAAAAACCCTTGAACTTATTTATCAAGTTGCCAAAGCAACATTTCTCATTTTCATTTGGGTTAAGTTGATGAAACAAAATTATTTCATCAAAATTATTAAACTAAAATAAAAATTATTATAAACTAAATAGACATTGAAAATGAAAATGTGACACTTTACAATAAGTTTTAATTTGTTACTATTAGTAACAGTTAACATAAAAAATACCTCGACAGCTTTTAATTATCTAAATGTTAATCTCAACATTTACTAGTATTAAAATCAAAAAGTTTTATCTGTTAACATCAGTTAATGCTCTGTGAACTAACATGAACAAACAATGAATGACTAAAGATTCATGTTAACTAATGCATTATCTAATGTTACTAATGAAACTTTATTGTAAAGTGTTATTAGAATGAAAATGGGAAATTGAGAATTGGGAAGGAAATGAGAAAATGGGAATTGATTCAGAAAAATTAGTGCATTTTCTCTAAAATCTCAAAATCTTGTATCAAAGTCCATATTTAAAACTATTGACTGTCTTAATTAATGTTCCTGGTCTTACTGTGTATGGTTCATCAGATGTTATTCTTAATAAATAAATGCATGTCTTCATAATACTAACAGCTACTAGTTCATTTGAATGTTAACCAATAGTCAATAGCTATTCATTTTTTCTCAAATCTTGCATGCTGTAATTTTCACATAATAAAATCAATTATTGAGTCATCACACAAACACTGTAAAACATTTAGAATTATGATTTTTTACACACTGATCAAATTTAACAAGCAAAACATGTACAAAGATTAATCAAAAGCAGGTAAAATCTCAACATGCTAATGTCAAAATCATCTTTTATTTCGACACTAAACACCCTGTTTTAAAAGAATAGTTCACCTAAAAATGAAATTAACTTCTTCCACATGGAAAAGAAAGATATGTTCCGTCTATATAATGAAAGTCAATGGGGTCCAAAACAACACTGACTTTCTTTGTATGGACACAAAAAGACGTATGTCAAAATATCTTTATGTTCCACAGACGAAAGAAAAAGTGGTATCAGTAAATGATCATTTCAGGCGAACATGTAAACTGATCTATATTTTTCAGATGTCTCATCTGATTATTGACTGATGGATGAATGTGTAATACTTCAACTTTAACACAAGTCTTCATTTTTAGCAGTTAAAACACTAAATGAACACATCTGACAGGAAATAACTGCGCAAACTCATTGACGCCGCTGATTTAATTCCACATGAAACTCTCAAAATGAGACACTAATTGAATGGAATCACGTGATCAGATAAAATTCATTAAACACATCAGATTCATTAACGAGTCCCAGTGTGTGTGTAAACTAAACGAATGTGATTTTACACTTTTCTCTCATTAAAACATAAAAATCAGTCTCATATGGAATGCTGAACGTGTGAAACATCATGATTAAATTATAAAGGCTAATCAGATGAAAAAAGTTATATTACATCAATATCAATAAAACATCACTTCATTTTCTACAGGATTCAATATGAAACAGACGCATGAAGTACTCGGACACACACACACACACACACACACACACACACGACTCACACATGGACTGATCCGTGACCTTTAAAGTATGATGTGATTCATTTCTGTTTGATTGACATTAAAACAGGAACATGTGGCTAAAATAATTTATAAAGTCTGTAAAAGGGTGAATATTAAACAGAAATCACACACGAGTCGGGACGCCTCTCGCGTTTACACTGATCAAACTCCACACGTGACACCAAAGTCTCTGAACACACTTAAAAAAAAAACCCACACAAATCCATCCCGTCTTTCCAGATCATGTGACCCATGTGAAAACAAGTCCGATAACAGTCTGATATCCCAGAACGTGCGTCTCAGGAGAGAGTGATCCATTAAACCAGTGACAGCGCTGTGAAAGGTCAAAGTGCGTGTGAAACTACTTGAACATCAAACGCTCAGGTACCGGAGGAACGTCAGTGTCTGCAGGGTCCGAACCGGTCCAGATCCGAGCGATCGATCGCCGTCGACGAGACTGTGGCGCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125611 lncRNA downstream 1300 94749 ~ 95258 (+) True G110539
TU125629 lncRNA downstream 2914 96363 ~ 98046 (+) True G110554
TU125626 lncRNA downstream 4761 98210 ~ 100847 (+) False G110552
TU125627 lncRNA downstream 4949 98398 ~ 101064 (+) True G110552
TU125662 lncRNA downstream 25712 119161 ~ 137052 (+) True G110581
CI01000020_00108833_00112799.mRNA mRNA downstream 15384 108833 ~ 113427 (+) True CI01000020_00108833_00112799
CI01000020_00126243_00220377.mRNA mRNA downstream 32794 126243 ~ 221460 (+) True CI01000020_00126243_00220377
CI01000020_00250359_00289375.mRNA mRNA downstream 156910 250359 ~ 289375 (+) True CI01000020_00250359_00289375
CI01000020_00466505_00489442.mRNA mRNA downstream 372827 466276 ~ 489664 (+) True CI01000020_00466505_00489442
CI01000020_00501322_00502978.mRNA mRNA downstream 407741 501190 ~ 503119 (+) True CI01000020_00501322_00502978
TU125641 other upstream 42658 30693 ~ 48040 (+) True G110562
TU125672 other downstream 87329 180778 ~ 226848 (+) False G110589
TU125671 other downstream 128682 222131 ~ 226848 (+) True G110589
TU125804 other downstream 717450 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125806 other downstream 974607 1068056 ~ 1086773 (+) True G110720
TU126005 other downstream 1282920 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288

Expression Profile