RNA id: TU125629


Basic Information

Item Value
RNA id TU125629
length 1533
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G110554
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 96363 ~ 98046 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATGGATGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGATGGATGGATGGATGAGGGATGGAGAGATGGATGGAAGGATGGATGGAGGGATGGATGCATGGATGGATGAAGGGGTGTATGGATGGATGGAGGAATGCATGGATGAATGGAGGAAGGGATGGATGGATGGATGGATGGATGGATGGATGGAAGGAGGGAAGGAATGACAGACAGAATCCTGATTTGTTTGTTGTGTCACTATTTCAGATGTTTCAATGTAATTAATTAGCAGCTTTTCATCAAATCACAAACTCCAGTTTGAGAAACTCTGCTTTAGAGGGTAAAGTCACACCATATCAACATTATTTACAGAGAATATAACTGATACTGACACTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGGGTGAAATGAACCTTTACCCTTGTTTGTCTGAGTCAGAATCTTGTTCAAACACACACACACACTAACACACACTCAGTGATTTCTCACCACTGCTGTCTCTCATGCTTCTCCTGTTTCTCACTTTCATAGATGACTGTGAGACCCCAACTACAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAAAAGAGTTAAACACAACTCTCTATCTGTTATGATTTCCACAGATGATCATGTCCAGAATCTCAAATGCACCTGTAATATTACATTATTATATTTGTACACCTGCAGCATCATCTGATTGGCTGACGCAGTCATCAGTGCTGTATGAACCAGATCTAACAGTTCTCTACATCCACTTCTCTTATTGAACAGTTATTAAATATGAACAGTGAAGCAGCTCCGCTGAAGATCATTGAGGCACTTTACAGCTCAAACAGAAGAAACTGAAGGATTCCTGTAAGAGCCTGAACTGCACGATTCATCCACTGACCCTATAAATGATCTTTAAATGATCAGCATGATCTGATAAACCTGATCTGATCGCACAAAACCTACTACATGCACTCGTTCTTTTTTAGCAAGTAAAAGTCTTGCACCAGATTTCATATTTTTGCTCAGTTTGAGTCTCTGAGTTTGAGTTCCTCCATGTTCTCACTATATCAGACTAAATGAGCCATAAAGGCCTGATGGATCAAATGTGATATTAACATAAAACACCTATGCAAACTTTTTTTTTTTGTCTAAGAGGTCCAATAAACTGTTCCATTTCAAACATTGATATTTTTTGGACTATTATTTCATATGTCAGGCTTTACAGGGTTATACTGTATAAACTGAGCACTGAATCAGCAGGTTATGAGCGTCTCTCTGATTCTGTGTGGACTCACACTGACACCTGCTGGTCAGGAATCACAGCGCACCACCGGCACATCCCCAGATTATTCATGAATATTCTCTAAATATTCAAAACATCCAGAGTTTTTAACATGTTTTTTCTTGGTTATGTGAGCATTAATGCAACATTCCATTGTATCATTCTTCAAACATTATGTGAACGTTACTTTTGAATGTTCTCTGAACGTTCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125611 lncRNA upstream 1105 94749 ~ 95258 (+) True G110539
TU125600 lncRNA upstream 2914 57204 ~ 93449 (+) False G110538
TU125626 lncRNA downstream 164 98210 ~ 100847 (+) False G110552
TU125627 lncRNA downstream 352 98398 ~ 101064 (+) True G110552
TU125662 lncRNA downstream 21115 119161 ~ 137052 (+) True G110581
TU125692 lncRNA downstream 216225 314271 ~ 314519 (+) True G110609
TU125698 lncRNA downstream 225020 323066 ~ 323265 (+) True G110615
CI01000020_00108833_00112799.mRNA mRNA downstream 10787 108833 ~ 113427 (+) True CI01000020_00108833_00112799
CI01000020_00126243_00220377.mRNA mRNA downstream 28197 126243 ~ 221460 (+) True CI01000020_00126243_00220377
CI01000020_00250359_00289375.mRNA mRNA downstream 152313 250359 ~ 289375 (+) True CI01000020_00250359_00289375
CI01000020_00466505_00489442.mRNA mRNA downstream 368230 466276 ~ 489664 (+) True CI01000020_00466505_00489442
CI01000020_00501322_00502978.mRNA mRNA downstream 403144 501190 ~ 503119 (+) True CI01000020_00501322_00502978
TU125641 other upstream 48323 30693 ~ 48040 (+) True G110562
TU125672 other downstream 82732 180778 ~ 226848 (+) False G110589
TU125671 other downstream 124085 222131 ~ 226848 (+) True G110589
TU125804 other downstream 712853 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125806 other downstream 970010 1068056 ~ 1086773 (+) True G110720
TU126005 other downstream 1278323 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288

Expression Profile