RNA id: TU125626


Basic Information

Item Value
RNA id TU125626
length 1345
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G110552
representative False

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 98210 ~ 101064 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACTGATGCATTCACCATCTTCAACTGTATTTGTGTAGCGCTTCTCAAAACACACAACAAAAAGGTCTTCATGGCATGAGCACCTATGACACCTTAAAATGCTGTTTATTTAGAAAGCTCACTAGGGTTTAGTACAGTTTTAATAATAATTCAGATTTAATCTCACCATGTGGGTGGGCGGAGCTTCTTTTTAATGCCGTGATAGACTTTCAGACACTTGACGGGCCATTCTCTCTCCGGACGGTTACTCTGAAAAGAAAGAGAGAGAGAGAGAAATATACCTACTAAAACACACACACTCCACCGAGAACCCAAAACTACAGGAAAACCACCACCTGAGAACCCATTAAACCAGAACAAGACAGACCAGTGACACTAAACCTCTACCTACACACACACACACACACACACACACACACAAAAGGAACCTTATCAAGCAGTAATGTTGAGCGTTGAGGACGTCAGCACACTATAACTAGGTGAACCCCCTCTCTCTCGCACACACTATCTGTACTCACACACTGCAGCTCTGGGCTTTGCAGCTTTTGCAGATTCTGTGTATGAGAGTTTGACAGTAAAACATCAATCAGATGCTCACTCGTTTGCTCTCTCACACTGACTGTATTTACACGCACAACAAATCACATTTAAGCTCTATATAGTGCAGCCGTATTCAGAATATGATGTTTATATGTGTCCTGGCATCAGAATATTGCTGTATACATGATTGCTGTAAGTCTGTTGTACATGACATCAGCGCTCTGCATGTCACATGTCAAGAGGTCAGAGAGGTCATTTACGTTCTGAGGATCAGAGACATGCAGGACGACGATCATGAAGCAACTACAACCTGAATTCCGGAAACGTTGGGACTTTCTTTAAATTTGAATAAAATGAAAACAAAAAGACTTTCAAATCACATGAGCCAATATTTTTCAAATTTGAAATGAGCTCATTTAGTGGATACAAGTGTAAAATTTCTCCTTTTAAACATTTATGTTATCCATGTTCTATTGTGAATAAAATATTGGCTCATGTGGTTTGAAAGTCTTTTAGTTTTCACCAACATTTCCGGAATTCGGGTTGTACATCATGACCACTTTTTTGGTGCAAATAACATTAGTTCAGGTTTGAATTTGCCATCAGGGAGAAAATTAAATGGACTATCATATTATCATATACAGATGTTTAATATGACACACGCTCTTACCCTGACTTCTTTATAGAGTCTGAGCGAGGTGCTGGTCAGGATGAAGTATCGGTCATTGAAGCTGCCGGTGCTCAAACCCAATCCCAGCAGACTCCTCTCCTCTCTGAACTTCATCATGCCGTGTTTGGAAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125629 lncRNA upstream 164 96363 ~ 98046 (+) True G110554
TU125611 lncRNA upstream 2952 94749 ~ 95258 (+) True G110539
TU125601 lncRNA upstream 4761 57204 ~ 93449 (+) False G110538
TU125662 lncRNA downstream 18314 119161 ~ 137052 (+) True G110581
TU125692 lncRNA downstream 213424 314271 ~ 314519 (+) True G110609
TU125698 lncRNA downstream 222219 323066 ~ 323265 (+) True G110615
TU125699 lncRNA downstream 223617 324464 ~ 324703 (+) True G110616
TU125700 lncRNA downstream 224088 324935 ~ 325154 (+) True G110617
CI01000020_00108833_00112799.mRNA mRNA downstream 7986 108833 ~ 113427 (+) True CI01000020_00108833_00112799
CI01000020_00126243_00220377.mRNA mRNA downstream 25396 126243 ~ 221460 (+) True CI01000020_00126243_00220377
CI01000020_00250359_00289375.mRNA mRNA downstream 149512 250359 ~ 289375 (+) True CI01000020_00250359_00289375
CI01000020_00466505_00489442.mRNA mRNA downstream 365429 466276 ~ 489664 (+) True CI01000020_00466505_00489442
CI01000020_00501322_00502978.mRNA mRNA downstream 400343 501190 ~ 503119 (+) True CI01000020_00501322_00502978
TU125641 other upstream 50170 30693 ~ 48040 (+) True G110562
TU125672 other downstream 79931 180778 ~ 226848 (+) False G110589
TU125671 other downstream 121284 222131 ~ 226848 (+) True G110589
TU125804 other downstream 710052 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125806 other downstream 967209 1068056 ~ 1086773 (+) True G110720
TU126005 other downstream 1275522 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288

Expression Profile