RNA id: TU125671


Basic Information

Item Value
RNA id TU125671
length 4574
RNA type TUCP
GC content 0.47
exon number 2
gene id G110589
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 180778 ~ 226848 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAATCCTTTTATTGCATTTGTAACATTTGGCACAGTACAAATTCATGGTGCTTTTACAAGATAAACCTGCAAAGATCAACATTGACCTTTTTCTTTTCTGTTTTTTAAAGAAAGACTTCTCAGTATAAATGTTTTTTTTTTTGTTTTTTTTTTGTATTTTTCACTGCATTCTCTGTAGCATTTAGAAATCACAGAATGCCCTTTTTAAACAAGACTACCCTCATTTCTTAAATTCAGTACAGCGTCTTAAAACAACTCATCTTTTAAATAGGAGTTATAAGTTAGAAAATAGTTTCAATTTATTATTTTTTAATATAATCTGCTTTTCTATTACCAGCCCATGGTAGTTCAGTTTTTCCATATATATTTATTTATAAGCATGTACAACAAGAATCAGTCTTTTGGAATTGCACTCTGTACAAAAAAAGTAGTTCCTGTCTGTCTTTTTTTTTCTCTTTTGTGCATTCTATTGCATGTTTTATGCTGGGGTGAGGGTGGGCTTATAAGGGAAAGAGAGGGTCATTTGACTGAGGTTTTGATTTGTTGGGGGGCAGATTATATTTGAGTCTCTTGTACTTTCTCCTTGGTGTGAGTTTTTATGACAAGGGCCTCAGGAGTAGCTGTGATAGCAGTGGGCAAGGTTCGAGGCAGAGAATTTCCAATGCTGTTGCTTTCTGTCCATTTGGCACCATGGCCTGGTGGCTTGTAAGTGTTGTATTTGGGCTTCAGGGTGCTGTAGTCGATCTTATGTGGGCTGTAGTCCATCTTGTGAGGACTGTAATCCATTTTGGACTTGTGGGGGCTGAAGTCACAACTGACATATTCCGCTTTGAGGGGGCTGTACTCTGCCTTGAAAGCACTGTAGTCAGGTTTGAAAAGGCTACAGTCTGTCTTGAAGGGGCTGTAATCGGATTTGGGCTTGGGCATACTGTAGTCAGTTTTCGATTTCGGAACACCATACTCTGGTTTGAATGGGCTGAAGTCTGGTTTAGAAGTATGAGATTTGTAGTCAGGTTTGTGAGTACTATATCCAGCATTGTAGGGACTCTGCTCAGGTTTTTTGTGTATGTGGTAATCCGGCAATGACTTGTGTGAATAGTCCGTCAGTTTGTGAGAGCTGTATTCCAGAGTAGGTTGGTACATATAGTCTGTTTTAGGTTTGTAGTTGTTGTAGTCTGACTTGGGTTTGTGGATGCTGAAATCTTGCTTGGACTTATGGGTACTGTATTCTGGATTTGGTTTGTAGCTGTAGTCAGATTTGTTGTAGTCCCGTTTGTAAATACTGTTATGATCCCTTATCTCTGGTAGAGTCAGTGCCCCCTCCCCTGCTATACTGGCAGCAGATGCTGGTGGTGGCAATTCCTCTTCTACCGGAATAATCTCCACAGTTCTGGCTGCAGCCACCGTGCTCCTCTGCTGATGCCTCTTTCGTAGTTTATAAAATACAATTAGCATGATTGCAGCTAGCAAGGTTACTGCCACAAAACAACCGATAATGATCTTTGTTGTCTTCATCACCTCATCCAGACTGGTACTGGCTGGGTTGGGCGGCTTTCCTGTCGTCACTTTTGAGCCAGGTACAACAGATGGGCGACTTGGGGGAGTGTCGGTGCTCTGGAGCAGGACTGTAGGCGTTGAGATAAAAACCGGCTGAAAGACGGATGGCGAGGCCGTGGTAGTGGTGCTGGCGCCTGCTGTAGTCGTGGTGGTTTTGGGCTTGGGCATTTCAGATGTGGGGTTCAGTACCTCCACTGTGACAGTGGTGAAGTAACTAAGGTTGGATGTGTTGAGTTCAGCCGCACTTACGTTTAAATAGGCTGAAGCGTTGGAATTTCCGGCGGCATTGGACACCATGCAGGTATACATACCCGTGTCACCTGCTAGCACATTTGAAAAGTTCAAAGTCCCATCATTTAGCACGGTTATCCGTGGGTGGCTTGATGCATGAGTTAAAACCGTCCCATTTGGTAGGAGCCATCGCACGGCAGACATGGCCGCTGTTCGACATCGCAATTCTGCCACGCGTTCAGCAGAAATATTCAGGTCTCTCGGGGCATCAGCAATAAAAGGGGCAGAGCACTGCATTGCCCCGGTGTCACCCCGGTCTAGCTCAACCAACTGGCGGCCTCTCATGTGTGCAGGGGAGTGACAACGCCCACAGCATGTCGAGTTGGTGGGTATGTACTCACGTAGCCAACGTGCTAGCCAGAGTGAGTCACACCCGCAGTTCCAGGGGTTATGGTGGAGGTGAAGTTCCACCAGGTACTTCAGTGGGGTAAAGAGGTCATGGGGCAGTGAGCTTAGATTGTTATGGGCCAAATTCAGTTCCACCAACGAGGCCAGGTCATCAAATGCATTTCGCTCAATTAGCCCTATTTGAGAGTTCATGATCCATAACTTTTTGAGCGAAGACAGTCCTCTGAATGAACCTGGTTTGATCTCAGGAAAAAGGTTCTCTGAGATTTCCAGCTCTTCCAACCCAACCAGAGGCGTCAGGTTGGGCATCTCTCCTCGAACATTGCACACTGCCAGGTTGAGGTACTTGAGGTTGACTAGACCCTCAAAGGCCCCATCCGAGATGTACTCTAGTTTTCTCAGTTCACCTAGATCCAATCTCATTAGGGATGGCACTCTGTTAAATGCATATGATGGGATGCTTTCAATGGGGTTATTTCTCAGCCACAGCTCTCGCAGCTTGGACAGATACTCAAATGCCCCACTTGGCACCACTGTCAACCTGTTATCAAATAGTTCCAGTGTATTGAGATTGGTCAGCCCACTGAAGGCACCCACTTCAATCTGTCTAATGGCGTTGCGACCCAGCTGCAGTACCTCCAAGTGATGGAGGTTGCGGAAAGAGTCGGCCTGTACAGCCTCGATGGCGTTCTCCATCAGGTTTAGGTGCCGCGTGTTGCTGGGTATTCCTGGTGGCACACGAGTGAGCCCACGTCTGGTGCACACCACCTTGCTGAGCTGGTTGTTGCAGGAGCAATCAGTCGGGCAGCCCTGGGGCCCTGCCGCGGCCGCCACCTCCACACACGCTTGAACCATGAGGAACAGGACACAGAGCAGGGCGGCTTTCCTGGCTCGACGCACAGCTACCCGCCCCAGGAGACTCATGATGTGGCACATTCATAATTCAGCATCGTCTGGGGGGGGCGTGGGGTGATGATGGTGGTTGGGGAGAGGGGGTAGAAAGCGGGGGGGAAGGGGGAGGGGTTCACCTCTGACTAATGAAGCCCTACCCTGGGTTAAACAACACTCTAGATTGTTTTTCCATTTACTGAACTGGAGGCTAAACGTTGAGTGACAAGTACTCAAGTAAAGAGGGAGAAGTGAAAAGCCAAGGAATAATGGATTAAATAAAACAGGGGACTATATTTTATGTATAAAAATGTTTTGAAAGGCTCAACACCTACCTCAAAGGTTTTATACGTCCAAATTTTGCAATCACAAAATAGTTTTTTTCCTCAAATTCTTATATTCCCAGGATAAGCAAAGCCTTCTCTTTTTTCATTTGTCAGAAAACAAGAGGTGAATGCCAAAATGGCCCCTAATAAATCCACAGAGAAGCATCCGAGGAGATGTGTAGTGGCTCTGCAGGGCCTCAGAGCTTTAGGCAAGAGTACCAATCCAGATTGGCTCCTATAGAAGCGCGCTCACTCTCGCACTATCCACAGATGCTTGTCCTTGGATACCTCCGCTTGACGCTGCTACTAAATGCCTGTGTCTCCATAGAGGACCGCTCACACATGCTAAACTTTACTTTGTCCGTCTCCCTCTCTCTCAGTATGTTTTGTCCGCTCGATTTGTCAGCACCTTGTCCAGCTGAAAAGACTGTGACACTGCGGTCATTAGCGCATTTCTTTCCTTAAGTAGCTCCGGGTTCCATCTCCGTACATGCGCTCGCACACAGCGAAGGCTGCAGGGTTCTTTCTGCACGCTTCCAATTATCCTTATTATTTTCTGTAAGAAGTTGATGATGAGAGTCCAGGGAAGGTGTAAAGGGAGGTACCAGTGCACAGGCAGCTCCGTAAGAAGGCTTGTTCACTGGAGAGAGATCGCTCTCTCTCTGCCTCGTTCTCCTTCGCTCTCTCCTGCTTTCGAGCGTGCTCTCTCACTCCCTGGAATGAGAGGGAAAAAAAGAGTGTTTCTCCCCCCTCTCTGTGACGTTGTGTTGATCAGAGAAGTATCCGTATAGTGCTGCAGTACCCTGAGCTCAGTGCAGAGTTGGAGCTCTCAGCTTTGTCAGCGGCACAGCTGTCCAGCTCAAGCTGGTGGACGAGCGCTGAGGCAAGGGAAAAGTGGCTCCCCATGGCAACATCTTTCCTTGCTGCCTCCTTTCTTTCCTTTTTATTTTTAACCTCGCCGGCCCCGGGTTAGTCCTTCCCGCCGCTGTGCACTGATGTTTTTTGCTGTGTTCTGTGGTGCAGTAGCAGGCACCCGGGACGCAGGCTTACTTGCCTGCTCTTCTTTTTGTCCTTCAATGAAAACGTGAATGTACTGCTGACGCATCACACTCCAAGCAGTGCATTGGTTTGATGCATTGGTTTTAGTACGTTAGCTCATCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125662 lncRNA upstream 85079 119161 ~ 137052 (+) True G110581
TU125627 lncRNA upstream 121067 98398 ~ 101064 (+) True G110552
TU125626 lncRNA upstream 121284 98210 ~ 100847 (+) False G110552
TU125629 lncRNA upstream 124085 96363 ~ 98046 (+) True G110554
TU125611 lncRNA upstream 126873 94749 ~ 95258 (+) True G110539
TU125692 lncRNA downstream 87423 314271 ~ 314519 (+) True G110609
TU125698 lncRNA downstream 96218 323066 ~ 323265 (+) True G110615
TU125699 lncRNA downstream 97616 324464 ~ 324703 (+) True G110616
TU125700 lncRNA downstream 98087 324935 ~ 325154 (+) True G110617
TU125702 lncRNA downstream 101549 328397 ~ 328731 (+) True G110619
CI01000020_00126243_00220377.mRNA mRNA upstream 671 126243 ~ 221460 (+) True CI01000020_00126243_00220377
CI01000020_00108833_00112799.mRNA mRNA upstream 108704 108833 ~ 113427 (+) True CI01000020_00108833_00112799
CI01000020_00250359_00289375.mRNA mRNA downstream 23511 250359 ~ 289375 (+) True CI01000020_00250359_00289375
CI01000020_00466505_00489442.mRNA mRNA downstream 239428 466276 ~ 489664 (+) True CI01000020_00466505_00489442
CI01000020_00501322_00502978.mRNA mRNA downstream 274342 501190 ~ 503119 (+) True CI01000020_00501322_00502978
CI01000020_00536611_00538626.mRNA mRNA downstream 308086 534934 ~ 538982 (+) True CI01000020_00536611_00538626
CI01000020_00603718_00606833.mRNA mRNA downstream 376738 603586 ~ 607523 (+) True CI01000020_00603718_00606833
TU125641 other upstream 174091 30693 ~ 48040 (+) True G110562
TU125804 other downstream 584051 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125806 other downstream 841208 1068056 ~ 1086773 (+) True G110720
TU126005 other downstream 1149521 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU126322 other downstream 2217396 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 2217396 2445064 ~ 2449807 (+) True G111173

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00053732 False 4108 mRNA 0.46 2 NC_007115.7 19534833 ~ 19539085 (+)