RNA id: TU125700


Basic Information

Item Value
RNA id TU125700
length 220
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G110617
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 324935 ~ 325154 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTAACATGTTCGTTTGAGAGAAATTTTAATATTCAATATGGCTGCTGTAGGAATGAAGGTTTTGGCGTTTTTTGGTGAAAAGAGCCCATTTCCAATTTGAAACTTCCCCCATTATAATCAGCAATGCAGTCACAGCTTCATCGGTTATAATAGGGGAAATCTTGTTGTGCTGCGTCATTGTGGCAGTATAGTGGGAGGTGTCACTTGCTTGATGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125699 lncRNA upstream 232 324464 ~ 324703 (+) True G110616
TU125698 lncRNA upstream 1670 323066 ~ 323265 (+) True G110615
TU125692 lncRNA upstream 10416 314271 ~ 314519 (+) True G110609
TU125662 lncRNA upstream 187883 119161 ~ 137052 (+) True G110581
TU125627 lncRNA upstream 223871 98398 ~ 101064 (+) True G110552
TU125702 lncRNA downstream 3243 328397 ~ 328731 (+) True G110619
TU125708 lncRNA downstream 13450 338604 ~ 338809 (+) True G110625
TU125717 lncRNA downstream 20986 346140 ~ 346431 (+) True G110634
TU125723 lncRNA downstream 26742 351896 ~ 352125 (+) True G110640
TU125724 lncRNA downstream 27753 352907 ~ 353517 (+) True G110641
CI01000020_00250359_00289375.mRNA mRNA upstream 35560 250359 ~ 289375 (+) True CI01000020_00250359_00289375
CI01000020_00126243_00220377.mRNA mRNA upstream 103475 126243 ~ 221460 (+) True CI01000020_00126243_00220377
CI01000020_00108833_00112799.mRNA mRNA upstream 211508 108833 ~ 113427 (+) True CI01000020_00108833_00112799
CI01000020_00466505_00489442.mRNA mRNA downstream 141122 466276 ~ 489664 (+) True CI01000020_00466505_00489442
CI01000020_00501322_00502978.mRNA mRNA downstream 176036 501190 ~ 503119 (+) True CI01000020_00501322_00502978
CI01000020_00536611_00538626.mRNA mRNA downstream 209780 534934 ~ 538982 (+) True CI01000020_00536611_00538626
CI01000020_00603718_00606833.mRNA mRNA downstream 278432 603586 ~ 607523 (+) True CI01000020_00603718_00606833
CI01000020_00621182_00624570.mRNA mRNA downstream 296028 621182 ~ 625201 (+) True CI01000020_00621182_00624570
TU125672 other upstream 98087 180778 ~ 226848 (+) False G110589
TU125671 other upstream 98087 222131 ~ 226848 (+) True G110589
TU125641 other upstream 276895 30693 ~ 48040 (+) True G110562
TU125804 other downstream 485745 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125806 other downstream 742902 1068056 ~ 1086773 (+) True G110720
TU126005 other downstream 1051215 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU126322 other downstream 2119090 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 2119090 2445064 ~ 2449807 (+) True G111173

Expression Profile