RNA id: TU125723


Basic Information

Item Value
RNA id TU125723
length 230
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G110640
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 351896 ~ 352125 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCTGACAGGTTTTAAAGGATGGAGTTGAGGTCAGACAGGAGACACAATTACTCTGTACACCTGACCTACTGTGATTCTGCTCTTTATTACCTTTTCATTCACATCCCTCATCCACCTTTCGTCTCTCTCCCACTCTCTATCATAGGTTTAGTGTACCACAGAGAGCTGCAGCATCACAAATCTCAGGCTGTTTACTCTGTTGCTATGGAGACGGCTCTCTCACGGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125717 lncRNA upstream 5465 346140 ~ 346431 (+) True G110634
TU125708 lncRNA upstream 13087 338604 ~ 338809 (+) True G110625
TU125702 lncRNA upstream 23165 328397 ~ 328731 (+) True G110619
TU125700 lncRNA upstream 26742 324935 ~ 325154 (+) True G110617
TU125699 lncRNA upstream 27193 324464 ~ 324703 (+) True G110616
TU125724 lncRNA downstream 782 352907 ~ 353517 (+) True G110641
TU125728 lncRNA downstream 5500 357625 ~ 357831 (+) True G110645
TU125747 lncRNA downstream 35522 387647 ~ 409164 (+) True G110663
TU125813 lncRNA downstream 101058 453183 ~ 541078 (+) True G110727
TU125818 lncRNA downstream 190475 542600 ~ 543136 (+) True G110732
CI01000020_00250359_00289375.mRNA mRNA upstream 62521 250359 ~ 289375 (+) True CI01000020_00250359_00289375
CI01000020_00126243_00220377.mRNA mRNA upstream 130436 126243 ~ 221460 (+) True CI01000020_00126243_00220377
CI01000020_00108833_00112799.mRNA mRNA upstream 238469 108833 ~ 113427 (+) True CI01000020_00108833_00112799
CI01000020_00466505_00489442.mRNA mRNA downstream 114151 466276 ~ 489664 (+) True CI01000020_00466505_00489442
CI01000020_00501322_00502978.mRNA mRNA downstream 149065 501190 ~ 503119 (+) True CI01000020_00501322_00502978
CI01000020_00536611_00538626.mRNA mRNA downstream 182809 534934 ~ 538982 (+) True CI01000020_00536611_00538626
CI01000020_00603718_00606833.mRNA mRNA downstream 251461 603586 ~ 607523 (+) True CI01000020_00603718_00606833
CI01000020_00621182_00624570.mRNA mRNA downstream 269057 621182 ~ 625201 (+) True CI01000020_00621182_00624570
TU125672 other upstream 125048 180778 ~ 226848 (+) False G110589
TU125671 other upstream 125048 222131 ~ 226848 (+) True G110589
TU125641 other upstream 303856 30693 ~ 48040 (+) True G110562
TU125804 other downstream 458774 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125806 other downstream 715931 1068056 ~ 1086773 (+) True G110720
TU126005 other downstream 1024244 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU126322 other downstream 2092119 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 2092119 2445064 ~ 2449807 (+) True G111173

Expression Profile