RNA id: TU125818


Basic Information

Item Value
RNA id TU125818
length 351
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G110732
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 542600 ~ 543136 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAAAATAGCGTCACTTTTTAAATATAGTGGCTGAAAGACTGACATTCCCTTTATAACACCAGAACCTACCAGAACTACTACATCTACCCCAGACTGCGTTAGCAAATCCAGGCGGTATTTGTCATCTTCACGGGTGCCGATAGCAGCACCACACAACAGCTGTTTGCGAGAATCTTTGGAGGCCAGAGGATAGTCCCTGTTCTTCTTCAGGTCTGTGCGGGCTATTATGGCCACCAGTTCATCCTTGTCATTCACAATGGGCAGCTTACCTTTTTTTGCTGCGTTGCAGGATATCATTGGCCTCTTTCAGTGTGACACCAGCAGGAGCAACAACAAGATCCTCTCTTTTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125813 lncRNA upstream 1522 453183 ~ 541078 (+) True G110727
TU125747 lncRNA upstream 133436 387647 ~ 409164 (+) True G110663
TU125728 lncRNA upstream 184769 357625 ~ 357831 (+) True G110645
TU125724 lncRNA upstream 189083 352907 ~ 353517 (+) True G110641
TU125723 lncRNA upstream 190475 351896 ~ 352125 (+) True G110640
TU125866 lncRNA downstream 10053 553189 ~ 553440 (+) True G110780
TU125869 lncRNA downstream 12903 556039 ~ 556269 (+) True G110783
TU125798 lncRNA downstream 15785 558921 ~ 560207 (+) True G110714
TU125809 lncRNA downstream 211317 754453 ~ 788626 (+) True G110723
TU125827 lncRNA downstream 344992 888128 ~ 888384 (+) True G110741
CI01000020_00536611_00538626.mRNA mRNA upstream 3618 534934 ~ 538982 (+) True CI01000020_00536611_00538626
CI01000020_00501322_00502978.mRNA mRNA upstream 39481 501190 ~ 503119 (+) True CI01000020_00501322_00502978
CI01000020_00466505_00489442.mRNA mRNA upstream 52936 466276 ~ 489664 (+) True CI01000020_00466505_00489442
CI01000020_00250359_00289375.mRNA mRNA upstream 253225 250359 ~ 289375 (+) True CI01000020_00250359_00289375
CI01000020_00126243_00220377.mRNA mRNA upstream 321140 126243 ~ 221460 (+) True CI01000020_00126243_00220377
CI01000020_00603718_00606833.mRNA mRNA downstream 60450 603586 ~ 607523 (+) True CI01000020_00603718_00606833
CI01000020_00621182_00624570.mRNA mRNA downstream 78046 621182 ~ 625201 (+) True CI01000020_00621182_00624570
CI01000020_00631105_00635541.mRNA mRNA downstream 87969 631105 ~ 635541 (+) True CI01000020_00631105_00635541
CI01000020_00643857_00646974.mRNA mRNA downstream 100721 643857 ~ 647559 (+) True CI01000020_00643857_00646974
CI01000020_00701439_00712656.mRNA mRNA downstream 158303 701439 ~ 712825 (+) True CI01000020_00701439_00712656
TU125672 other upstream 315752 180778 ~ 226848 (+) False G110589
TU125671 other upstream 315752 222131 ~ 226848 (+) True G110589
TU125641 other upstream 494560 30693 ~ 48040 (+) True G110562
TU125804 other downstream 267763 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125806 other downstream 524920 1068056 ~ 1086773 (+) True G110720
TU126005 other downstream 833233 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU126322 other downstream 1901108 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 1901108 2445064 ~ 2449807 (+) True G111173

Expression Profile