RNA id: TU125866


Basic Information

Item Value
RNA id TU125866
length 252
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G110780
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 553189 ~ 553440 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTAACTTAAATTCCTCTCCGGTCTCATGAGAGGACTTGAATGCAAACCCTATGACCCATTTCCATAATAGTCTAGCACCACTGCTAGATTTAAAAGTCAGCCACAACCAATTACCAGAAGCCAATTGCTAAAGGATGACAGTGCTTAAGGAAATTTACCAAATACCCACCATTGACTGGCCAGCACATTCCACACACGAAAGCGCAAACTAATTTTGATATAATCAGTATAGTCCTTTAATGTGCGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125818 lncRNA upstream 10053 542600 ~ 543136 (+) True G110732
TU125813 lncRNA upstream 12111 453183 ~ 541078 (+) True G110727
TU125747 lncRNA upstream 144025 387647 ~ 409164 (+) True G110663
TU125728 lncRNA upstream 195358 357625 ~ 357831 (+) True G110645
TU125724 lncRNA upstream 199672 352907 ~ 353517 (+) True G110641
TU125869 lncRNA downstream 2599 556039 ~ 556269 (+) True G110783
TU125798 lncRNA downstream 5481 558921 ~ 560207 (+) True G110714
TU125809 lncRNA downstream 201013 754453 ~ 788626 (+) True G110723
TU125827 lncRNA downstream 334688 888128 ~ 888384 (+) True G110741
TU125900 lncRNA downstream 339502 892942 ~ 893173 (+) True G110808
CI01000020_00536611_00538626.mRNA mRNA upstream 14207 534934 ~ 538982 (+) True CI01000020_00536611_00538626
CI01000020_00501322_00502978.mRNA mRNA upstream 50070 501190 ~ 503119 (+) True CI01000020_00501322_00502978
CI01000020_00466505_00489442.mRNA mRNA upstream 63525 466276 ~ 489664 (+) True CI01000020_00466505_00489442
CI01000020_00250359_00289375.mRNA mRNA upstream 263814 250359 ~ 289375 (+) True CI01000020_00250359_00289375
CI01000020_00126243_00220377.mRNA mRNA upstream 331729 126243 ~ 221460 (+) True CI01000020_00126243_00220377
CI01000020_00603718_00606833.mRNA mRNA downstream 50146 603586 ~ 607523 (+) True CI01000020_00603718_00606833
CI01000020_00621182_00624570.mRNA mRNA downstream 67742 621182 ~ 625201 (+) True CI01000020_00621182_00624570
CI01000020_00631105_00635541.mRNA mRNA downstream 77665 631105 ~ 635541 (+) True CI01000020_00631105_00635541
CI01000020_00643857_00646974.mRNA mRNA downstream 90417 643857 ~ 647559 (+) True CI01000020_00643857_00646974
CI01000020_00701439_00712656.mRNA mRNA downstream 147999 701439 ~ 712825 (+) True CI01000020_00701439_00712656
TU125672 other upstream 326341 180778 ~ 226848 (+) False G110589
TU125671 other upstream 326341 222131 ~ 226848 (+) True G110589
TU125641 other upstream 505149 30693 ~ 48040 (+) True G110562
TU125804 other downstream 257459 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125806 other downstream 514616 1068056 ~ 1086773 (+) True G110720
TU126005 other downstream 822929 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU126322 other downstream 1890804 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 1890804 2445064 ~ 2449807 (+) True G111173

Expression Profile