Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU125798 |
| length | 1005 |
| lncRNA type | antisense_over |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G110714 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000020 |
| NCBI id | null |
| chromosome length | 7209782 |
| location | 558921 ~ 560207 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU125869 | lncRNA | upstream | 2652 | 556039 ~ 556269 (+) | True | G110783 |
| TU125866 | lncRNA | upstream | 5481 | 553189 ~ 553440 (+) | True | G110780 |
| TU125818 | lncRNA | upstream | 15785 | 542600 ~ 543136 (+) | True | G110732 |
| TU125813 | lncRNA | upstream | 17843 | 453183 ~ 541078 (+) | True | G110727 |
| TU125747 | lncRNA | upstream | 149757 | 387647 ~ 409164 (+) | True | G110663 |
| TU125809 | lncRNA | downstream | 194246 | 754453 ~ 788626 (+) | True | G110723 |
| TU125827 | lncRNA | downstream | 327921 | 888128 ~ 888384 (+) | True | G110741 |
| TU125900 | lncRNA | downstream | 332735 | 892942 ~ 893173 (+) | True | G110808 |
| TU125914 | lncRNA | downstream | 409186 | 969393 ~ 970349 (+) | True | G110822 |
| TU125828 | lncRNA | downstream | 414664 | 974871 ~ 975583 (+) | True | G110742 |
| CI01000020_00536611_00538626.mRNA | mRNA | upstream | 19939 | 534934 ~ 538982 (+) | True | CI01000020_00536611_00538626 |
| CI01000020_00501322_00502978.mRNA | mRNA | upstream | 55802 | 501190 ~ 503119 (+) | True | CI01000020_00501322_00502978 |
| CI01000020_00466505_00489442.mRNA | mRNA | upstream | 69257 | 466276 ~ 489664 (+) | True | CI01000020_00466505_00489442 |
| CI01000020_00250359_00289375.mRNA | mRNA | upstream | 269546 | 250359 ~ 289375 (+) | True | CI01000020_00250359_00289375 |
| CI01000020_00126243_00220377.mRNA | mRNA | upstream | 337461 | 126243 ~ 221460 (+) | True | CI01000020_00126243_00220377 |
| CI01000020_00603718_00606833.mRNA | mRNA | downstream | 43379 | 603586 ~ 607523 (+) | True | CI01000020_00603718_00606833 |
| CI01000020_00621182_00624570.mRNA | mRNA | downstream | 60975 | 621182 ~ 625201 (+) | True | CI01000020_00621182_00624570 |
| CI01000020_00631105_00635541.mRNA | mRNA | downstream | 70898 | 631105 ~ 635541 (+) | True | CI01000020_00631105_00635541 |
| CI01000020_00643857_00646974.mRNA | mRNA | downstream | 83650 | 643857 ~ 647559 (+) | True | CI01000020_00643857_00646974 |
| CI01000020_00701439_00712656.mRNA | mRNA | downstream | 141232 | 701439 ~ 712825 (+) | True | CI01000020_00701439_00712656 |
| TU125672 | other | upstream | 332073 | 180778 ~ 226848 (+) | False | G110589 |
| TU125671 | other | upstream | 332073 | 222131 ~ 226848 (+) | True | G110589 |
| TU125641 | other | upstream | 510881 | 30693 ~ 48040 (+) | True | G110562 |
| TU125804 | other | downstream | 250692 | 810899 ~ 816510 (+) | True | CI01000020_00810993_00815495 |
| TU125806 | other | downstream | 507849 | 1068056 ~ 1086773 (+) | True | G110720 |
| TU126005 | other | downstream | 816162 | 1376369 ~ 1378349 (+) | True | CI01000020_01375811_01378288 |
| TU126322 | other | downstream | 1884037 | 2445064 ~ 2445556 (+) | False | G111173 |
| TU126324 | other | downstream | 1884037 | 2445064 ~ 2449807 (+) | True | G111173 |
