RNA id: TU126896



Basic Information


Item Value
RNA id TU126896
length 3431
lncRNA type read_through
GC content 0.39
exon number 4
gene id G111674
representative False

Chromosome Information


Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 814110 ~ 887919 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TAATGACACAAATTTCATTTTTGGGTGAATTAACCCTTTAAAGTTACTCTTTAAAAGCACTAATAATTTATTAACACTGTTAAATGTAATCTTTAGCAAATCTCAAAAAGATTATCCATTTCTTATACTGCACCTTATAATGTTGTAATTGTTTAATTAAAGATGCAATATGTAAGAATTTTGCAGTAAAATATCCAAAAACCACTAGGCCAGTGTTATATGTGTTGTTCACTTGAGTACTTCCAATATCCCAAATGTTTCCAACTATTTGTAAATCGTGAGAAAATTGCAATTTTAACCAAGGCTCCGGGACGTGTGAGGAGTCACCTGTCAATTGCGTCATACCCGCGTTATCCTCGGTTTCCGGTTTTATTTTGTACAAACCATGGAAACACCAAAGACACTTTAATATTTACATGTTTCAATAGGCAAGGGAACAACTGTTTTGATATATTTATTGACAGAAATATTGTTATATAGCTCAACACGTTTAGTCTTATTGTTTAAATCTAATTTTCTTGATTTTTTTGCGAGTACCATGCTTTTACCATGCCTCAGAGAAAAACACTATTTTGTGAAGTAGCTAAAATAGCATAATCAGATGCAGCTTTATTTTTAGTAACAGTAATACAGCATTTTCTCCATCATACAATACGTTTTAAAATTAATTCCATGCCATTTATCAACACAAGCCATCCAGCATTCAATATGATATTCCAAAAATTTATCTAGCTTACTGCAGTGTGCAACAAGTGTCTCACAGCAGCCACCGAGCGAACGTAACTTTATAACATAATTTTCAACACACTCAAATGTATCTAATATGATAAACAGAGCTGTGTTACCTCATACTCATGACTGGAAAAGCAGAAGCAGTGCCGGCGACTGTGGCATAATAAAAGTTCTGCTGCTCGTGAGGCGTGTGTTGCACAATCGCTCCAGCGGCCTCGTTCAGCTCCCACAACACTCGGTCTTGCTCTGCTTCATTAATAATCGCATCCATGAACATGATTTCTGCCCGAGTCCTATCCCGATTATTTTCCACCGGCTGTGAGGTGAAGACCACATGTCCCAAGATTCCGCGCTCAAACTTGGTGTCATCAAGCTACGGCTTTGTTTTGAATAGGCCTCTAGCGACCTCTAGCGGACAGATAATTTTACATATTGCACCTTTAACTTTTTGATTTTTAGTGTGTTTAGTAATTTATTACTAAAAACTAATTTTTTGTCATATTTACACACTAGCTTTAATTTGTAGCTGTAAAGCTTTAGGCTCATTTGTATCACGACACTCATTCATTGTACTTCATTGAAGTCCTCTAGGCTTATTTATAGACTAGTGAATAAGACAGACCTGTGAAATCACTCCCAGCCTCTCTGATTGCTTTACAATGCCTGAAAAATTATAAAGCCTTTATGAGTGACAATTGCAGTCTCTTGTAATGCCCATATGCTTCTCTCATCTTCTCAGTAATAAAAAACAATTGACCAAGATGGTTTATGACCCACAGTGCAGCGCTTTTACCATCAGACAGGTTGACTGCAGTAATGTCTGGCACCCGGAGAGATTGATCCCATCTAGTTATTTCAGCAATGAACTAGATTCAACAAAAGGTTGACCAAATGAATCAGAGGAGGTTGTAAGTATTTGTGACACACCACCAGACTACATGGCACCTGATGATGACTGATAAGCCATTTCAAGTTGATGTTAACTGAAACATTTGTTTGTCATTGCTGTGGTGGTTAGGGCTGGTAAAAGCCATACCAGTAATGTAACTATGACCAAATCCCATTTAAATCAGCACTTTATCAGCTTCAGTAGTCACTCATTAACTTTTAAATATAAGATTAACGGCCCTTATCCAGGCTTTTTAACTTTTGTGTTTATGTTTGCTCTTTACTTCTCTTCAAGTGACCTTATCTGCCCATGCTGCTGTAGACGTCCTGGGACACCGGTACTCTAAAGAGCGTGAGGCTGTCTGTCATCACCAGGCGTCGCTTGGCTATATCTGGCTCTTTCAGACCTGCCACGTCTCTCAGCATGCTTTTTGTCTTCCCTCTAATAACCCGCCGCACATGTCGAGTGCCTCAGAATAAGCCGCAGTTGCAGTTTCTATGCAATGTGACATCATATCGCACAGGCCCATCCCACGACTGCTGACGGACTCTGTTCTATTAGCATAGTCTCCGTCCTGAGTGAGCTGTACACAGTCCGCCATGTTTATCTCCTCAACAGCAGCATTCAGAACTCCAAATGAGGCCACAAAAACATCTCTAATTTACGTCATCTGTGAATTCTGTGGCTGGTGAAAGAAGGAAGAGAGTCTGAAAAAGGAGCCACACGTACCGTTCCCACACACACCGTCTTACTGCACAGACAGCACTTGGATCCTAGAACAAGAAACTTCTCTCTCTCCGGGCTGAAGGGATCCTTCATGCCATAACATTCCTCTAAGAGCCTGCGGGACAGAGCACATCTCAATCACTGACGTCTTTGACACAGTCATTTTTACACAGATTCTGCCTGACATAATAGAAGATGCATCATTACATTAAAATGAATGTATGGCGTGCTCAATAGGCTACTACAAACATTCAAACAAGATTTTGGCTAGGATGTTTCTGCAACCTACACCCCCTTTGACTGTTCAAATAGGCACTTGTTTTCAGAAAGCACACTCACATTTTACAGTTCAGGTGATGGAATCCTGCTAATTGGCCATCATCATCATCATGAAAGAGCACAGCAACACATGCACTTCTTAAGAAAACTGAACATGAAGTGTTAATCAGACACACTGAAATATAAATTGCCTATAATCAGAATCTTTCCATACATCATATTAGTGAGGGCGAAACAATAGATGTCATGGTTTAGCCTAATAAGAAGTAAAATCGCCCATAGTGTTTGATGTGAAAGGACTTATTTATGGACACGTAATTCAAGTAGAACATAACGTCACTACAATAAACACACACAGCTGTCAAGTTCAGCAACTGCAAACTTTACATATATTTTGTGATTCATGACCTGGATTATTTATAAAAGTTCTTATTAAGTTTCACCTATGAAAATCCTCCAGTTCCTGCAGATTCTTCAGTTTTCCAGCATCTTTTGCATATTTGAACCCTTTCCAGCAGTGACTGTATGATTCTCAGATCCATCTTTTCACACTGAGGGACTATTAACTATTACAAAAGCTACAAACATTCACTGACGCTCACTGATGAAGTTTTTTTTATTTTGTTTAAAGAACATTTTTTCATTTAATTCTGCCCTTTGGAAGCTACAAAAGATACTTACATGTTTCCCAGAAGACAAAAAAAAGTACAATTTATTCTGTTCATCCAATTCAAAAAGTTTACACCCCCGACTCTTAATGCGTCGTGTTTCCTTCTGGAGCATCAGTGAATGTTTGAGTCCCTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126946 lncRNA downstream 24649 788939 ~ 789461 (-) True G111720
TU126924 lncRNA downstream 56389 756298 ~ 757721 (-) True G111699
TU126859 lncRNA downstream 84128 729147 ~ 729982 (-) True G111657
TU126845 lncRNA downstream 152884 660982 ~ 661226 (-) True G111645
TU126843 lncRNA downstream 153687 660199 ~ 660423 (-) True G111643
TU126988 lncRNA upstream 209 888128 ~ 888422 (-) True G111762
TU126919 lncRNA upstream 1073 888992 ~ 892782 (-) True G111694
TU126884 lncRNA upstream 10286 898205 ~ 900349 (-) True G111670
TU126995 lncRNA upstream 68500 956419 ~ 956733 (-) True G111769
TU126999 lncRNA upstream 87133 975052 ~ 975584 (-) True G111773
CI01000020_00771062_00774260.mRNA mRNA downstream 39586 770959 ~ 774524 (-) True CI01000020_00771062_00774260
CI01000020_00734012_00742045.mRNA mRNA downstream 72065 733617 ~ 742045 (-) True CI01000020_00734012_00742045
CI01000020_00686072_00697099.mRNA mRNA downstream 116621 685836 ~ 697489 (-) True CI01000020_00686072_00697099
CI01000020_00668211_00680679.mRNA mRNA downstream 133350 667869 ~ 680760 (-) True CI01000020_00668211_00680679
CI01000020_00648652_00656756.mRNA mRNA downstream 157343 648259 ~ 656767 (-) False CI01000020_00648652_00656756
CI01000020_00901339_00902642.mRNA mRNA upstream 13308 901227 ~ 902642 (-) True CI01000020_00901339_00902642
CI01000020_00903124_00916916.mRNA mRNA upstream 15187 903106 ~ 916916 (-) True CI01000020_00903124_00916916
CI01000020_00919569_00931298.mRNA mRNA upstream 31650 919569 ~ 931298 (-) True CI01000020_00919569_00931298
CI01000020_00936240_00942015.mRNA mRNA upstream 47891 935810 ~ 942015 (-) True CI01000020_00936240_00942015
CI01000020_00996310_01006955.mRNA mRNA upstream 108391 996310 ~ 1006955 (-) True CI01000020_00996310_01006955
TU126840 other downstream 156854 654708 ~ 657256 (-) True CI01000020_00648652_00656756
TU126838 other downstream 166581 645989 ~ 647529 (-) True G111638
TU126821 other downstream 227043 584212 ~ 587067 (-) False G111625
TU126532 other downstream 707126 97024 ~ 102468 (-) True G111351
TU127001 other upstream 85689 973608 ~ 974641 (-) False G111774
TU127002 other upstream 85689 973608 ~ 974641 (-) True G111774
TU127088 other upstream 592225 1480144 ~ 1481058 (-) False CI01000020_01463785_01480876
TU127090 other upstream 592225 1484581 ~ 1484978 (-) True G111853
TU127420 other upstream 1230444 2118363 ~ 2121232 (-) False G112136

Expression Profile