RNA id: TU125827


Basic Information

Item Value
RNA id TU125827
length 257
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G110741
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 888128 ~ 888384 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGCGACGAGAATACTTTTTGTGCACAAAAACAAAACAAAAATAACGACTTTATTCAACAATTTCTCCTACGCAGTTTACGTTGAAGACACATTGCAGAGCTTCCGTGTTCTACGTCAGAACACCAACTCTGCTCATGTGTGTTCGGACGTAAACACAAAAATGCTGCATCAACAGTGTAGGAGACTGACAGGGTAGAGAAGAAATTGTTGAATAAAGTAGTTATTTTTGTTTTGTTTTTGTGCACAAAAAATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125809 lncRNA upstream 99502 754453 ~ 788626 (+) True G110723
TU125798 lncRNA upstream 327921 558921 ~ 560207 (+) True G110714
TU125869 lncRNA upstream 331859 556039 ~ 556269 (+) True G110783
TU125866 lncRNA upstream 334688 553189 ~ 553440 (+) True G110780
TU125818 lncRNA upstream 344992 542600 ~ 543136 (+) True G110732
TU125900 lncRNA downstream 4558 892942 ~ 893173 (+) True G110808
TU125914 lncRNA downstream 81009 969393 ~ 970349 (+) True G110822
TU125828 lncRNA downstream 86487 974871 ~ 975583 (+) True G110742
TU125824 lncRNA downstream 87285 975669 ~ 976633 (+) True G110738
TU125934 lncRNA downstream 139060 1027444 ~ 1066165 (+) False G110836
CI01000020_00819154_00820506.mRNA mRNA upstream 66855 818849 ~ 821273 (+) True CI01000020_00819154_00820506
CI01000020_00810993_00815495.mRNA mRNA upstream 72420 810993 ~ 815708 (+) False CI01000020_00810993_00815495
CI01000020_00798124_00809552.mRNA mRNA upstream 78071 797612 ~ 810057 (+) True CI01000020_00798124_00809552
CI01000020_00752731_00769950.mRNA mRNA upstream 118101 752694 ~ 770027 (+) False CI01000020_00752731_00769950
CI01000020_00715984_00729331.mRNA mRNA upstream 158167 715984 ~ 729961 (+) True CI01000020_00715984_00729331
CI01000020_00892454_00900973.mRNA mRNA downstream 4070 892454 ~ 901051 (+) True CI01000020_00892454_00900973
CI01000020_00934438_00935330.mRNA mRNA downstream 46054 934438 ~ 935356 (+) True CI01000020_00934438_00935330
CI01000020_00949140_00951237.mRNA mRNA downstream 60372 948756 ~ 952785 (+) True CI01000020_00949140_00951237
CI01000020_00959078_00971223.mRNA mRNA downstream 70694 959078 ~ 971999 (+) True CI01000020_00959078_00971223
CI01000020_01083614_01106789.mRNA mRNA downstream 194846 1083230 ~ 1107257 (+) False CI01000020_01083614_01106789
TU125804 other upstream 71618 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125672 other upstream 661280 180778 ~ 226848 (+) False G110589
TU125671 other upstream 661280 222131 ~ 226848 (+) True G110589
TU125641 other upstream 840088 30693 ~ 48040 (+) True G110562
TU125806 other downstream 179672 1068056 ~ 1086773 (+) True G110720
TU126005 other downstream 487985 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU126322 other downstream 1555860 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 1555860 2445064 ~ 2449807 (+) True G111173
TU126334 other downstream 1759127 2647511 ~ 2658913 (+) True G111183

Expression Profile