RNA id: TU125900


Basic Information

Item Value
RNA id TU125900
length 232
lncRNA type intronic
GC content 0.25
exon number 1
gene id G110808
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 892942 ~ 893173 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTACACTTGACTTGACTAATTTTTCATTTCCTTCTGACCTTTTGAAAATGCAGATATGTTACAAATGCCTTTAAGTTATTTAGGTGATTCGATTGGTCATCATGAACTAGCAAGAAAAAAACAAAACATGAGTATTTAAAAAAAAAAAATACGCACACACTTATGAATATACTGTATATATAAAGCATATTTTTCTTCTAAAAATGTAAAATTAACATTTTAAAAATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125827 lncRNA upstream 4558 888128 ~ 888384 (+) True G110741
TU125809 lncRNA upstream 104316 754453 ~ 788626 (+) True G110723
TU125798 lncRNA upstream 332735 558921 ~ 560207 (+) True G110714
TU125869 lncRNA upstream 336673 556039 ~ 556269 (+) True G110783
TU125866 lncRNA upstream 339502 553189 ~ 553440 (+) True G110780
TU125914 lncRNA downstream 76220 969393 ~ 970349 (+) True G110822
TU125828 lncRNA downstream 81698 974871 ~ 975583 (+) True G110742
TU125824 lncRNA downstream 82496 975669 ~ 976633 (+) True G110738
TU125934 lncRNA downstream 134271 1027444 ~ 1066165 (+) False G110836
TU125936 lncRNA downstream 134271 1027444 ~ 1027862 (+) False G110836
CI01000020_00819154_00820506.mRNA mRNA upstream 71669 818849 ~ 821273 (+) True CI01000020_00819154_00820506
CI01000020_00810993_00815495.mRNA mRNA upstream 77234 810993 ~ 815708 (+) False CI01000020_00810993_00815495
CI01000020_00798124_00809552.mRNA mRNA upstream 82885 797612 ~ 810057 (+) True CI01000020_00798124_00809552
CI01000020_00752731_00769950.mRNA mRNA upstream 122915 752694 ~ 770027 (+) False CI01000020_00752731_00769950
CI01000020_00715984_00729331.mRNA mRNA upstream 162981 715984 ~ 729961 (+) True CI01000020_00715984_00729331
CI01000020_00934438_00935330.mRNA mRNA downstream 41265 934438 ~ 935356 (+) True CI01000020_00934438_00935330
CI01000020_00949140_00951237.mRNA mRNA downstream 55583 948756 ~ 952785 (+) True CI01000020_00949140_00951237
CI01000020_00959078_00971223.mRNA mRNA downstream 65905 959078 ~ 971999 (+) True CI01000020_00959078_00971223
CI01000020_01083614_01106789.mRNA mRNA downstream 190057 1083230 ~ 1107257 (+) False CI01000020_01083614_01106789
CI01000020_01120223_01142481.mRNA mRNA downstream 227050 1120223 ~ 1142573 (+) True CI01000020_01120223_01142481
TU125804 other upstream 76432 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125672 other upstream 666094 180778 ~ 226848 (+) False G110589
TU125671 other upstream 666094 222131 ~ 226848 (+) True G110589
TU125641 other upstream 844902 30693 ~ 48040 (+) True G110562
TU125806 other downstream 174883 1068056 ~ 1086773 (+) True G110720
TU126005 other downstream 483196 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU126322 other downstream 1551071 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 1551071 2445064 ~ 2449807 (+) True G111173
TU126334 other downstream 1754338 2647511 ~ 2658913 (+) True G111183

Expression Profile