Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU125914 |
| length | 927 |
| lncRNA type | intronic |
| GC content | 0.37 |
| exon number | 2 |
| gene id | G110822 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000020 |
| NCBI id | null |
| chromosome length | 7209782 |
| location | 969393 ~ 970349 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU125900 | lncRNA | upstream | 76220 | 892942 ~ 893173 (+) | True | G110808 |
| TU125827 | lncRNA | upstream | 81009 | 888128 ~ 888384 (+) | True | G110741 |
| TU125809 | lncRNA | upstream | 180767 | 754453 ~ 788626 (+) | True | G110723 |
| TU125798 | lncRNA | upstream | 409186 | 558921 ~ 560207 (+) | True | G110714 |
| TU125869 | lncRNA | upstream | 413124 | 556039 ~ 556269 (+) | True | G110783 |
| TU125828 | lncRNA | downstream | 4522 | 974871 ~ 975583 (+) | True | G110742 |
| TU125824 | lncRNA | downstream | 5320 | 975669 ~ 976633 (+) | True | G110738 |
| TU125934 | lncRNA | downstream | 57095 | 1027444 ~ 1066165 (+) | False | G110836 |
| TU125936 | lncRNA | downstream | 57095 | 1027444 ~ 1027862 (+) | False | G110836 |
| TU125935 | lncRNA | downstream | 83488 | 1053837 ~ 1065989 (+) | True | G110836 |
| CI01000020_00949140_00951237.mRNA | mRNA | upstream | 16608 | 948756 ~ 952785 (+) | True | CI01000020_00949140_00951237 |
| CI01000020_00934438_00935330.mRNA | mRNA | upstream | 34037 | 934438 ~ 935356 (+) | True | CI01000020_00934438_00935330 |
| CI01000020_00892454_00900973.mRNA | mRNA | upstream | 68342 | 892454 ~ 901051 (+) | True | CI01000020_00892454_00900973 |
| CI01000020_00819154_00820506.mRNA | mRNA | upstream | 148120 | 818849 ~ 821273 (+) | True | CI01000020_00819154_00820506 |
| CI01000020_00810993_00815495.mRNA | mRNA | upstream | 153685 | 810993 ~ 815708 (+) | False | CI01000020_00810993_00815495 |
| CI01000020_01083614_01106789.mRNA | mRNA | downstream | 112881 | 1083230 ~ 1107257 (+) | False | CI01000020_01083614_01106789 |
| CI01000020_01120223_01142481.mRNA | mRNA | downstream | 149874 | 1120223 ~ 1142573 (+) | True | CI01000020_01120223_01142481 |
| CI01000020_01147997_01150696.mRNA | mRNA | downstream | 177196 | 1147545 ~ 1150963 (+) | True | CI01000020_01147997_01150696 |
| CI01000020_01187688_01253805.mRNA | mRNA | downstream | 217230 | 1187579 ~ 1254010 (+) | True | CI01000020_01187688_01253805 |
| CI01000020_01275836_01316392.mRNA | mRNA | downstream | 305487 | 1275836 ~ 1316392 (+) | True | CI01000020_01275836_01316392 |
| TU125804 | other | upstream | 152883 | 810899 ~ 816510 (+) | True | CI01000020_00810993_00815495 |
| TU125672 | other | upstream | 742545 | 180778 ~ 226848 (+) | False | G110589 |
| TU125671 | other | upstream | 742545 | 222131 ~ 226848 (+) | True | G110589 |
| TU125641 | other | upstream | 921353 | 30693 ~ 48040 (+) | True | G110562 |
| TU125806 | other | downstream | 97707 | 1068056 ~ 1086773 (+) | True | G110720 |
| TU126005 | other | downstream | 406020 | 1376369 ~ 1378349 (+) | True | CI01000020_01375811_01378288 |
| TU126322 | other | downstream | 1473895 | 2445064 ~ 2445556 (+) | False | G111173 |
| TU126324 | other | downstream | 1473895 | 2445064 ~ 2449807 (+) | True | G111173 |
| TU126334 | other | downstream | 1677162 | 2647511 ~ 2658913 (+) | True | G111183 |
