Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU125828 |
| length | 713 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 1 |
| gene id | G110742 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000020 |
| NCBI id | null |
| chromosome length | 7209782 |
| location | 974871 ~ 975583 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU125914 | lncRNA | upstream | 4522 | 969393 ~ 970349 (+) | True | G110822 |
| TU125900 | lncRNA | upstream | 81698 | 892942 ~ 893173 (+) | True | G110808 |
| TU125827 | lncRNA | upstream | 86487 | 888128 ~ 888384 (+) | True | G110741 |
| TU125809 | lncRNA | upstream | 186245 | 754453 ~ 788626 (+) | True | G110723 |
| TU125798 | lncRNA | upstream | 414664 | 558921 ~ 560207 (+) | True | G110714 |
| TU125824 | lncRNA | downstream | 86 | 975669 ~ 976633 (+) | True | G110738 |
| TU125934 | lncRNA | downstream | 51861 | 1027444 ~ 1066165 (+) | False | G110836 |
| TU125936 | lncRNA | downstream | 51861 | 1027444 ~ 1027862 (+) | False | G110836 |
| TU125935 | lncRNA | downstream | 78254 | 1053837 ~ 1065989 (+) | True | G110836 |
| TU125829 | lncRNA | downstream | 81858 | 1057441 ~ 1068884 (+) | True | G110743 |
| CI01000020_00959078_00971223.mRNA | mRNA | upstream | 2872 | 959078 ~ 971999 (+) | True | CI01000020_00959078_00971223 |
| CI01000020_00949140_00951237.mRNA | mRNA | upstream | 22086 | 948756 ~ 952785 (+) | True | CI01000020_00949140_00951237 |
| CI01000020_00934438_00935330.mRNA | mRNA | upstream | 39515 | 934438 ~ 935356 (+) | True | CI01000020_00934438_00935330 |
| CI01000020_00892454_00900973.mRNA | mRNA | upstream | 73820 | 892454 ~ 901051 (+) | True | CI01000020_00892454_00900973 |
| CI01000020_00819154_00820506.mRNA | mRNA | upstream | 153598 | 818849 ~ 821273 (+) | True | CI01000020_00819154_00820506 |
| CI01000020_01083614_01106789.mRNA | mRNA | downstream | 107647 | 1083230 ~ 1107257 (+) | False | CI01000020_01083614_01106789 |
| CI01000020_01120223_01142481.mRNA | mRNA | downstream | 144640 | 1120223 ~ 1142573 (+) | True | CI01000020_01120223_01142481 |
| CI01000020_01147997_01150696.mRNA | mRNA | downstream | 171962 | 1147545 ~ 1150963 (+) | True | CI01000020_01147997_01150696 |
| CI01000020_01187688_01253805.mRNA | mRNA | downstream | 211996 | 1187579 ~ 1254010 (+) | True | CI01000020_01187688_01253805 |
| CI01000020_01275836_01316392.mRNA | mRNA | downstream | 300253 | 1275836 ~ 1316392 (+) | True | CI01000020_01275836_01316392 |
| TU125804 | other | upstream | 158361 | 810899 ~ 816510 (+) | True | CI01000020_00810993_00815495 |
| TU125672 | other | upstream | 748023 | 180778 ~ 226848 (+) | False | G110589 |
| TU125671 | other | upstream | 748023 | 222131 ~ 226848 (+) | True | G110589 |
| TU125641 | other | upstream | 926831 | 30693 ~ 48040 (+) | True | G110562 |
| TU125806 | other | downstream | 92473 | 1068056 ~ 1086773 (+) | True | G110720 |
| TU126005 | other | downstream | 400786 | 1376369 ~ 1378349 (+) | True | CI01000020_01375811_01378288 |
| TU126322 | other | downstream | 1468661 | 2445064 ~ 2445556 (+) | False | G111173 |
| TU126324 | other | downstream | 1468661 | 2445064 ~ 2449807 (+) | True | G111173 |
| TU126334 | other | downstream | 1671928 | 2647511 ~ 2658913 (+) | True | G111183 |
