RNA id: TU125935


Basic Information

Item Value
RNA id TU125935
length 188
lncRNA type read_through
GC content 0.45
exon number 2
gene id G110836
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 1027444 ~ 1066165 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACCTCCAGTATGTAGTAGCTGGTCAGAAAAACTACAGGAGCAGTTTGGGAAAACTGCAGTCAAATCAGACCCATCACACAGGTTCACACTTCCTGTGGTGAAGGAACATGAGAAGACGGGATTTCCTGTGCTCTCCAGACTCAAGGCAAGATGTAGAGTAATCTGTGTAGAAGAGGTTAGTAAAGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125936 lncRNA upstream 25975 1027444 ~ 1027862 (+) False G110836
TU125824 lncRNA upstream 77204 975669 ~ 976633 (+) True G110738
TU125828 lncRNA upstream 78254 974871 ~ 975583 (+) True G110742
TU125914 lncRNA upstream 83488 969393 ~ 970349 (+) True G110822
TU125900 lncRNA upstream 160664 892942 ~ 893173 (+) True G110808
TU126004 lncRNA downstream 308468 1374457 ~ 1374879 (+) False CI01000020_01375811_01378288
TU126006 lncRNA downstream 313689 1379678 ~ 1379912 (+) True G110891
TU126007 lncRNA downstream 314223 1380212 ~ 1380452 (+) True G110892
TU126025 lncRNA downstream 321349 1387338 ~ 1387541 (+) True G110908
TU126026 lncRNA downstream 321620 1387609 ~ 1387903 (+) True G110909
CI01000020_00959078_00971223.mRNA mRNA upstream 81838 959078 ~ 971999 (+) True CI01000020_00959078_00971223
CI01000020_00949140_00951237.mRNA mRNA upstream 101052 948756 ~ 952785 (+) True CI01000020_00949140_00951237
CI01000020_00934438_00935330.mRNA mRNA upstream 118481 934438 ~ 935356 (+) True CI01000020_00934438_00935330
CI01000020_00892454_00900973.mRNA mRNA upstream 152786 892454 ~ 901051 (+) True CI01000020_00892454_00900973
CI01000020_00819154_00820506.mRNA mRNA upstream 232564 818849 ~ 821273 (+) True CI01000020_00819154_00820506
CI01000020_01083614_01106789.mRNA mRNA downstream 17241 1083230 ~ 1107257 (+) False CI01000020_01083614_01106789
CI01000020_01120223_01142481.mRNA mRNA downstream 54234 1120223 ~ 1142573 (+) True CI01000020_01120223_01142481
CI01000020_01147997_01150696.mRNA mRNA downstream 81556 1147545 ~ 1150963 (+) True CI01000020_01147997_01150696
CI01000020_01187688_01253805.mRNA mRNA downstream 121590 1187579 ~ 1254010 (+) True CI01000020_01187688_01253805
CI01000020_01275836_01316392.mRNA mRNA downstream 209847 1275836 ~ 1316392 (+) True CI01000020_01275836_01316392
TU125804 other upstream 237327 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125672 other upstream 826989 180778 ~ 226848 (+) False G110589
TU125671 other upstream 826989 222131 ~ 226848 (+) True G110589
TU125641 other upstream 1005797 30693 ~ 48040 (+) True G110562
TU125806 other downstream 2067 1068056 ~ 1086773 (+) True G110720
TU126005 other downstream 310380 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU126322 other downstream 1378255 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 1378255 2445064 ~ 2449807 (+) True G111173
TU126334 other downstream 1581522 2647511 ~ 2658913 (+) True G111183

Expression Profile