RNA id: TU126006


Basic Information

Item Value
RNA id TU126006
length 235
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G110891
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 1379678 ~ 1379912 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAAAATGGTGGAGACCATTGTAACCGAACGGCGGAAGGGGAGGCACAAGTAGCAATTTATGCCCCTCATCAAATACAATGCAGTGTAAATTATGACATTTAGGAAATGGCTTCTGAAAAATATGAGTAATAACATAATTAGATCATAAAGAAAAACAGCAGATTTATTTTCAAATTGAATAGACCAGCATCGCAGTACACAAAGAACAGTGGCTATGATACTGTAAGGGTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126004 lncRNA upstream 4799 1374457 ~ 1374879 (+) False CI01000020_01375811_01378288
TU125829 lncRNA upstream 310794 1057441 ~ 1068884 (+) True G110743
TU125934 lncRNA upstream 313513 1027444 ~ 1066165 (+) False G110836
TU125935 lncRNA upstream 313689 1053837 ~ 1065989 (+) True G110836
TU125936 lncRNA upstream 351816 1027444 ~ 1027862 (+) False G110836
TU126007 lncRNA downstream 300 1380212 ~ 1380452 (+) True G110892
TU126025 lncRNA downstream 7426 1387338 ~ 1387541 (+) True G110908
TU126026 lncRNA downstream 7697 1387609 ~ 1387903 (+) True G110909
TU126014 lncRNA downstream 88272 1468184 ~ 1476360 (+) True G110897
TU126047 lncRNA downstream 99182 1479094 ~ 1479329 (+) True G110928
CI01000020_01375811_01378288.mRNA mRNA upstream 610 1373164 ~ 1379068 (+) False CI01000020_01375811_01378288
CI01000020_01341579_01343530.mRNA mRNA upstream 35632 1340893 ~ 1344046 (+) True CI01000020_01341579_01343530
CI01000020_01275836_01316392.mRNA mRNA upstream 63286 1275836 ~ 1316392 (+) True CI01000020_01275836_01316392
CI01000020_01187688_01253805.mRNA mRNA upstream 125668 1187579 ~ 1254010 (+) True CI01000020_01187688_01253805
CI01000020_01147997_01150696.mRNA mRNA upstream 228715 1147545 ~ 1150963 (+) True CI01000020_01147997_01150696
CI01000020_01383268_01384854.mRNA mRNA downstream 3356 1383268 ~ 1386041 (+) True CI01000020_01383268_01384854
CI01000020_01395424_01397266.mRNA mRNA downstream 15214 1395126 ~ 1397343 (+) True CI01000020_01395424_01397266
CI01000020_01400705_01401757.mRNA mRNA downstream 18384 1398296 ~ 1402082 (+) True CI01000020_01400705_01401757
CI01000020_01416902_01441420.mRNA mRNA downstream 36990 1416902 ~ 1441556 (+) True CI01000020_01416902_01441420
CI01000020_01447228_01456657.mRNA mRNA downstream 66492 1446404 ~ 1457595 (+) True CI01000020_01447228_01456657
TU126005 other upstream 1329 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU125806 other upstream 292905 1068056 ~ 1086773 (+) True G110720
TU125804 other upstream 563168 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125672 other upstream 1152830 180778 ~ 226848 (+) False G110589
TU125671 other upstream 1152830 222131 ~ 226848 (+) True G110589
TU126322 other downstream 1064332 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 1064332 2445064 ~ 2449807 (+) True G111173
TU126334 other downstream 1267599 2647511 ~ 2658913 (+) True G111183
TU128026 other downstream 1921259 3301171 ~ 3303730 (+) True G112679
TU128103 other downstream 2334469 3714381 ~ 3733586 (+) True G112753

Expression Profile