RNA id: TU126025


Basic Information

Item Value
RNA id TU126025
length 204
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G110908
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 1387338 ~ 1387541 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATAAACTAATAATGGCAGAGGGTTTTCACCGCAATGCCATATACAGTTGCAAGAAAAAGTATGTGAACCACTTGCAGAATCTGTGAAAATGTGAACAATTTTGACAAAATAAGAGAGATCATACAAAATGCATGTTATTTTTTATTTAGTACTGTCCTGTGTAAGATATTTTACATAAAAGATGTTTACATATAATCCATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126007 lncRNA upstream 6886 1380212 ~ 1380452 (+) True G110892
TU126006 lncRNA upstream 7426 1379678 ~ 1379912 (+) True G110891
TU126004 lncRNA upstream 12459 1374457 ~ 1374879 (+) False CI01000020_01375811_01378288
TU125829 lncRNA upstream 318454 1057441 ~ 1068884 (+) True G110743
TU125935 lncRNA upstream 321349 1053837 ~ 1065989 (+) True G110836
TU126026 lncRNA downstream 68 1387609 ~ 1387903 (+) True G110909
TU126014 lncRNA downstream 80643 1468184 ~ 1476360 (+) True G110897
TU126047 lncRNA downstream 91553 1479094 ~ 1479329 (+) True G110928
TU126067 lncRNA downstream 127140 1514681 ~ 1516164 (+) True G110940
TU126077 lncRNA downstream 149412 1536953 ~ 1538262 (+) True G110950
CI01000020_01383268_01384854.mRNA mRNA upstream 1297 1383268 ~ 1386041 (+) True CI01000020_01383268_01384854
CI01000020_01375811_01378288.mRNA mRNA upstream 8270 1373164 ~ 1379068 (+) False CI01000020_01375811_01378288
CI01000020_01341579_01343530.mRNA mRNA upstream 43292 1340893 ~ 1344046 (+) True CI01000020_01341579_01343530
CI01000020_01275836_01316392.mRNA mRNA upstream 70946 1275836 ~ 1316392 (+) True CI01000020_01275836_01316392
CI01000020_01187688_01253805.mRNA mRNA upstream 133328 1187579 ~ 1254010 (+) True CI01000020_01187688_01253805
CI01000020_01395424_01397266.mRNA mRNA downstream 7585 1395126 ~ 1397343 (+) True CI01000020_01395424_01397266
CI01000020_01400705_01401757.mRNA mRNA downstream 10755 1398296 ~ 1402082 (+) True CI01000020_01400705_01401757
CI01000020_01416902_01441420.mRNA mRNA downstream 29361 1416902 ~ 1441556 (+) True CI01000020_01416902_01441420
CI01000020_01447228_01456657.mRNA mRNA downstream 58863 1446404 ~ 1457595 (+) True CI01000020_01447228_01456657
CI01000020_01484806_01488530.mRNA mRNA downstream 97075 1484616 ~ 1489015 (+) True CI01000020_01484806_01488530
TU126005 other upstream 8989 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU125806 other upstream 300565 1068056 ~ 1086773 (+) True G110720
TU125804 other upstream 570828 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125672 other upstream 1160490 180778 ~ 226848 (+) False G110589
TU126322 other downstream 1056703 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 1056703 2445064 ~ 2449807 (+) True G111173
TU126334 other downstream 1259970 2647511 ~ 2658913 (+) True G111183
TU128026 other downstream 1913630 3301171 ~ 3303730 (+) True G112679
TU128103 other downstream 2326840 3714381 ~ 3733586 (+) True G112753

Expression Profile